© 2000 - 2012 Virginia Bioinformatics Institute
Wednesday, 16 May 2012
Tyler, Brett , Ph.D.
Faculty - Publications - Tyler, Brett

Adjunct Faculty
Professor, Department of Plant Pathology, Physiology and Weed Science

Phone: (540) 231-7318
Email:btyler@vbi.vt.edu
Fax: 540 231 2606

Administrative Specialist: Maureen Lawrence-Kuether
Phone: (540) 231-3669
Email: mlawre04@vbi.vt.edu
Fax:540-231-2606

Personal_Page | Tyler Research Group | Oomycete Molecular Genetics Research Collaboration Network | Plant-Associated Microbe Gene Ontology



Publications:

2012


Kale SD, Tyler BM. Identification of lipid-binding effectors. Methods Mol Biol. 2012;835:393–414.  http://www.ncbi.nlm.nih.gov/pubmed/22183667

2011


Dong S Yin W. Kong G. Yang X. Gutob D. Chen Q. Kale S.D. Sui Y. Zhang Z. Dou D. Zheng X Gijzen M. Tyler B.M. Wang Y. Phytophthora sojae avirulence effector Avr3b is a secreted NADH and ADP-ribose pyrophosphorylase that modulates plant immunity". PLoS Pathogens. 2011;7(11):e1002353.  

Dong S, Yu D, Cui L, et al. Sequence variants of the Phytophthora sojae RXLR effector Avr3a/5 are differentially recognized by Rps3a and Rps5 in soybean. PLoS One. 2011;6:e20172.  http://www.ncbi.nlm.nih.gov/pubmed/21779316

Falin LJ, Tyler BM. Using interpolation to estimate system uncertainty in gene expression experiments. PLoS One. 2011;6:e22071.  http://www.ncbi.nlm.nih.gov/pubmed/21799771

Gu B Kale S.D. Wang Q. Pan Q. Cao H. Meng Y. Kang Z. Tyler B.M. Shan W. The secreted protein Ps87 of Puccinia striiformis is conserved in diverse fungal pathogens and contains an RXLR-like motif sufficient for translocation into plant cells. PLoS One. 2011;6(11):e27217.  

Kale SD, Tyler BM. Assaying effector function in planta using double-barreled particle bombardment. Methods Mol Biol. 2011;712:153–172.  http://www.ncbi.nlm.nih.gov/pubmed/21359807

Kale SD, Tyler BM. Entry of oomycete and fungal effectors into plant and animal host cells. Cell Microbiol. 2011.  http://www.ncbi.nlm.nih.gov/pubmed/21819515

Plett JM, Kemppainen M, Kale SD, et al. A secreted effector protein of Laccaria bicolor is required for symbiosis development. Curr Biol. 2011;21:1197–1203.  http://www.ncbi.nlm.nih.gov/pubmed/21757352

Rouxel T, Grandaubert J, Hane JK, et al. Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations. Nat Commun. 2011;2:202.  http://www.ncbi.nlm.nih.gov/pubmed/21326234

Wang Q, Han C, Ferreira AO, et al. Transcriptional programming and functional interactions within the Phytophthora sojae RXLR effector repertoire. Plant Cell. 2011;23:2064–2086.  http://www.ncbi.nlm.nih.gov/pubmed/21653195

2010


Dou D, Kale SD, Liu T, et al. Different domains of Phytophthora sojae effector Avr4/6 are recognized by soybean resistance genes Rps4 and Rps6. Mol Plant Microbe Interact. 2010;23:425–435.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=20192830

Kale SD, Gu B, Capelluto DG, et al. External lipid PI3P mediates entry of eukaryotic pathogen effectors into plant and animal host cells. Cell. 2010;142:284–295.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=20655469

Levesque CA, Brouwer H, Cano L, et al. Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire. Genome Biol. 2010;11:R73.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=20626842

Torto-Alalibo T, Collmer CW, Gwinn-Giglio M, et al. Unifying themes in microbial associations with animal and plant hosts described using the Gene Ontology. Microbiol. Molec. Biol. Rev.. 2010;74:in press.  

Tucker DM, Maroof MAS, Mideros S, et al. Mapping Quantitative Trait Loci for Partial Resistance to Phytophthora sojae in a Soybean Interspecific Cross. Crop Science. 2010;50:628–635.  

Tyler BM. Towards a systems-level understanding of oomycete-plant interactions. Minneapolis: American Phytopathological Society; 2010. Proceedings of the 10th US-Japan seminar: Genome-Enabled Integration of Research in Plant Pathogen S.  

Wang H-H, Waller L, Tripathy S, et al. Discovery of genes underlying soybean QTL conferring partial resistance to Phytophthora sojae. Plant Genome. 2010;3:14–22.  

2009


Chibucos MC, Collmer CW, Torto-Alalibo T, et al. Programmed cell death in host-symbiont associations, viewed through the Gene Ontology. BMC Microbiol. 2009;9 Suppl 1:S5.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19278553

Chibucos MC, Tyler BM. Common themes in nutrient acquisition by plant symbiotic microbes, described by the Gene Ontology. BMC Microbiol. 2009;9 Suppl 1:S6.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19278554

Dong S, Qutob D, Tedman-Jones J, et al. The Phytophthora sojae avirulence locus Avr3c encodes a multi-copy RXLR effector with sequence polymorphisms among pathogen strains. PLoS One. 2009;4:e5556.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19440541

Kale SD, Tyler BM. Assaying effector function in planta using double-barreled particle bombardment. In: McDowell JM, ed. Methods in Molecular Biology. The Plant Immune Response. Totowa, NJ: Humana; 2009:in press.  

Meng S, Torto-Alalibo T, Chibucos MC, Tyler BM, Dean RA. Common processes in pathogenesis by fungal and oomycete plant pathogens, described with Gene Ontology terms. BMC Microbiol. 2009;9 Suppl 1:S7.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19278555

Qutob D, Tedman-Jones J, Dong S, et al. Copy number variation and transcriptional polymorphisms of Phytophthora sojae RXLR effector genes Avr1a and Avr3a. PLoS One. 2009;4:e5066.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19343173

Torto-Alalibo T, Collmer CW, Lindeberg M, Bird D, Collmer A, Tyler BM. Common and contrasting themes in host cell-targeted effectors from bacterial, fungal, oomycete and nematode plant symbionts described using the Gene Ontology. BMC Microbiol. 2009;9 Suppl 1:S3.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19278551

Tseng TT, Tyler BM, Setubal JC. Protein secretion systems in bacterial-host associations, and their description in the Gene Ontology. BMC Microbiol. 2009;9 Suppl 1:S2.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19278550

Tyler BM. Viewing the microbial world through the lens of the Gene Ontology. Trends Microbiol. 2009;17:259–261.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19577929

Tyler BM. Entering and breaking: virulence effector proteins of oomycete plant pathogens. Cell Microbiol. 2009;11:13–20.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18783481

Tyler BM. Ch. 18 Effectors. In: Lamour K, Kamoun S, eds. Oomycete Genetics and Genomics: Diversity, Interactions and Research Tools. Hoboken, New Jersey: Wiley-Blackwell; 2009:361–385.  

Tyler BM, Sanchez C(eds). Special issue: Gene Ontology for Microbiologists. Trends Microbiol.. 2009;17:259–336.  

Zhou L, Mideros SX, Bao L, et al. Infection and genotype remodel the entire soybean transcriptome. BMC Genomics. 2009;10:49.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19171053

2008


Dou D, Kale SD, Wang X, et al. Conserved C-terminal motifs required for avirulence and suppression of cell death by Phytophthora sojae effector Avr1b. Plant Cell. 2008;20:1118–1133.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18390593

Dou D, Kale SD, Wang X, et al. RXLR-mediated entry of Phytophthora sojae effector Avr1b into soybean cells does not require pathogen-encoded machinery. Plant Cell. 2008;20:1930–1947.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18621946

Jiang RH, Tripathy S, Govers F, Tyler BM. RXLR effector reservoir in two Phytophthora species is dominated by a single rapidly evolving superfamily with more than 700 members. Proc Natl Acad Sci U S A. 2008;105:4874–4879.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18344324

Tyler BM. Genomics of Fungal- and Oomycete-Soybean Interactions. In: Stacey G, ed. Soybean Genomics. New York: Springer; 2008:243–267.  

Tyler BM, Dou D, Kale SD, et al. The effector repertoire of Phytophthora sojae: structure, function and evolution. In: Lorito M, Woo S, Scala F, eds. Biology of Molecular Plant-Microbe Interactions. Vol. 6. St. Paul, Minnesota: International Society for Molecular Plant-Microbe Interactions; 2008.  

Tyler BM, Jiang RHY, Zhou L, et al. Functional genomics and bioinformatics of the Phytophthora sojae-soybean interaction. In: Gustafson P, Stacey G, Taylor J, eds. The Genomics of Disease. New York: Kluwer Academic/Plenum Publisher; 2008:67–78.  

2007


Martin FN, Bensasson D, Tyler BM, Boore JL. Mitochondrial genome sequences and comparative genomics of Phytophthora ramorum and P. sojae. Curr Genet. 2007;51:285–296.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17310332

Torto-Alalibo TA, Tripathy S, Smith BM, et al. Expressed sequence tags from phytophthora sojae reveal genes specific to development and infection. Mol Plant Microbe Interact. 2007;20:781–793.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17601166

Tyler BM. Phytophthora sojae: root rot pathogen of soybean and model oomycete. Mol Plant Pathol. 2007;8:1–8.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=20507474

2006


Jiang RH, Tyler BM, Govers F. Comparative analysis of Phytophthora genes encoding secreted proteins reveals conserved synteny and lineage-specific gene duplications and deletions. Mol Plant Microbe Interact. 2006;19:1311–1321.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17153915

Jiang RH, Tyler BM, Whisson SC, Hardham AR, Govers F. Ancient origin of elicitin gene clusters in Phytophthora genomes. Mol Biol Evol. 2006;23:338–351.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16237208

Krampis K, Tyler BM, Boore JL. Extensive variation in nuclear mitochondrial DNA content between the genomes of Phytophthora sojae and Phytophthora ramorum. Mol Plant Microbe Interact. 2006;19:1329–1336.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17153917

Tripathy S, Pandey VN, Fang B, Salas F, Tyler BM. VMD: a community annotation database for oomycetes and microbial genomes. Nucleic Acids Res. 2006;34:D379–81.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16381891

Tripathy S, Tyler BM. The repertoire of transfer RNA genes is tuned to codon usage bias in the genomes of Phytophthora sojae and Phytophthora ramorum. Mol Plant Microbe Interact. 2006;19:1322–1328.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17153916

Tyler BM. Genomics of Fungal Plant Pathogens. Encyclopedia of Plant and Crop Science. 2006:1–5.  http://www.informaworld.com/10.1081/E-EPCS-120019942

Tyler BM, Tripathy S, Zhang X, et al. Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis. Science. 2006;313:1261–1266.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16946064

Valer K, Fliegmann J, Frohlich A, Tyler BM, Ebel J. Spatial and temporal expression patterns of Avr1b-1 and defense-related genes in soybean plants upon infection with Phytophthora sojae. FEMS Microbiol Lett. 2006;265:60–68.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17010107

Zhang X, Scheuring C, Tripathy S, et al. An integrated BAC and genome sequence physical map of Phytophthora sojae. Mol Plant Microbe Interact. 2006;19:1302–1310.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17153914

2005


Rehmany AP, Gordon A, Rose LE, et al. Differential recognition of highly divergent downy mildew avirulence gene alleles by RPP1 resistance genes from two Arabidopsis lines. Plant Cell. 2005;17:1839–1850.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15894715

2004


Shan W, Cao M, Leung D, Tyler BM. The Avr1b locus of Phytophthora sojae encodes an elicitor and a regulator required for avirulence on soybean plants carrying resistance gene Rps1b. Mol Plant Microbe Interact. 2004;17:394–403.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15077672

Waugh ME, Tyler BM, Mitchell T, et al. The Phytophthora Genome Consortium Database.; 2004. NAR Molecular Biology Database Collection entry number 98.  http://www.oxfordjournals.org/nar/database/summary/98

2003


Hirsch AM, Bauer WD, Bird DM, Cullimore J, Tyler B, Yoder JI. Molecular Signals and Receptors: Controlling Rhizosphere Interactions between Plants and Other Organisms. Ecology. 2003;84:858–868.  http://www.jstor.org/stable/3108029

2002


MacGregor T, Bhattacharyya M, Tyler BM, Bhat R, Schmitthenner AF, Gijzen M. Genetic and physical mapping of Avr1a in Phytophthora sojae. Genetics. 2002:949.  Caras Galadhon: Wordperfect

Tyler BM. Molecular basis of recognition between phytophthora pathogens and their hosts. Annu Rev Phytopathol. 2002;40:137–167.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12147757

2001


Chamnanpunt J, Shan WX, Tyler BM. High frequency mitotic gene conversion in genetic hybrids of the oomycete Phytophthora sojae. Proc Natl Acad Sci U S A. 2001;98:14530–14535.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11724938

Tyler BM. Genetics and genomics of the oomycete-host interface. Trends Genet. 2001;17:611–614.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11672843

2000


de la Serna I, Cujec TP, Shi Y, Tyler BM. Non-coordinate regulation of 5S rRNA genes and the gene encoding the 5S rRNA-binding ribosomal protein homolog in Neurospora crassa. Mol Gen Genet. 2000;263:987–994.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10954084

1999


de la Serna I, Ng D, Tyler BM. Carbon regulation of ribosomal genes in Neurospora crassa occurs by a mechanism which does not require Cre-1, the homologue of the Aspergillus carbon catabolite repressor, CreA. Fungal Genet Biol. 1999;26:253–269.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10361038

1998


Morris PF, Bone E, Tyler BM. Chemotropic and contact responses of phytophthora sojae hyphae to soybean isoflavonoids and artificial substrates. Plant Physiol. 1998;117:1171–1178.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9701573

1996


Claassen VP, Zasoski RJ, Tyler BM. A method for direct soil extraction and PCR amplification of endomycorrhizal fungal DNA. Mycorrhiza. 1996;6:447–450.  http://dx.doi.org/10.1007%2Fs005720050145

Cujec TP, Tyler BM. Nutritional and growth control of ribosomal protein mRNA and rRNA in Neurospora crassa. Nucleic Acids Res. 1996;24:943–950.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8600464

Cujec TP, Tyler BM. Functional promoter elements common to ribosomal protein and ribosomal RNA genes in Neurospora crassa. Mol Gen Genet. 1996;253:205–216.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9003305

Gijzen M, Forster H, Coffey MD, Tyler BM. Cosegregation of Avr4 and Avr6 in Phytophthora sojae. Can. J. Bot.. 1996;74:800–802.  

Mao Y, Tyler BM. Cloning and sequence analysis of elicitin genes of Phytophthora sojae. Fungal Genet Biol. 1996;20:169–172.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8810521

Mao Y, Tyler BM. The Phytophthora sojae genome contains tandem repeat sequences which vary from strain to strain. Fungal Genet Biol. 1996;20:43–51.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8634945

Tyler BM, Wu M, Wang J, Cheung W, Morris PF. Chemotactic Preferences and Strain Variation in the Response of Phytophthora sojae Zoospores to Host Isoflavones. Appl Environ Microbiol. 1996;62:2811–2817.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16535375

1995


Tyler B, Forster H, Coffey MD. Inheritance of avirulence factors and restriction fragment length polymorphism markers in outcrosses of the oomycete Phytophthora sojae. Mol. Plant Microbe Interactions. 1995;8:515–523.  

Tyler BM, Holland MJ. RNA polymerases and transcription factors of fungi. In: Brambl R, Marzluf G, Lemke PA, eds. The Mycota: Biochemistry and Molecular Biology. Berlin: Springer-Verlag; 1995:in press. The Mycota: a treatise on the biology of fungi with emphasis on systems for fundamental and applied research Iv.  

1994


F. Phytophthora-Sojae Races Have Arisen by Clonal Evolution and by Rare Outcrosses. Molecular Plant-Microbe Interactions. 1994;7:780–791.  

Kamoun S, Young M, Forster H, Coffey MD, Tyler BM. Potential Role of Elicitins in the Interaction between Phytophthora Species and Tobacco. Appl Environ Microbiol. 1994;60:1593–1598.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16349258

1993


Judelson HS, Coffey MD, Arredondo FR, Tyler BM. Transformation of the oomycete pathogen Phytophthora megasperma f. sp. glycinea occurs by DNA integration into single or multiple chromosomes. Curr Genet. 1993;23:211–218.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8382110

Kamoun S, Klucher KM, Coffey MD, Tyler BM. A gene encoding a host-specific elicitor protein of Phytophthora parasitica. Mol Plant Microbe Interact. 1993;6:573–581.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8274771

Kamoun S, Young M, Glascock C, Tyler BM. Extracellular protein elicitors of Phytophthora: host-specificity and induction of resistance to bacterial and fungal phytopathogens. Mol. Plant-Microbe Interact.. 1993;6:15–25.  

Tyler BM. To kill or not to kill: the genetic relationship between a parasite and an endophyte. Trends Microbiol. 1993;1:252–254.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8162404

1992


Anderson PA, Tyler BM, Pryor A. Genome complexity of the maize rust fungus,Puccinia sorghi. Experimental Mycology. 1992;16:302–307.  http://www.sciencedirect.com/science/article/B6WFF-4HCKH2N-6/2/b0216c16b9c595538e56e2eea184a584

Judelson HS, Tyler BM, Michelmore RW. Regulatory sequences for expressing genes in oomycete fungi. Mol Gen Genet. 1992;234:138–146.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=1495476

1991


Judelson HS, Tyler BM, Michelmore RW. Transformation of the oomycete pathogen, Phytophthora infestans. Mol Plant Microbe Interact. 1991;4:602–607.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=1804404

Mao Y, Tyler BM. Genome Organization of Phytophthora megasperma f.sp. glycinea. Exp. Mycol.. 1991;15:283–291.  

Shi YG, Tyler BM. Coordinate expression of ribosomal protein genes in Neurospora crassa and identification of conserved upstream sequences. Nucleic Acids Res. 1991;19:6511–6517.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=1836561

Shi YG, Tyler BM. All internal promoter elements of Neurospora crassa 5 S rRNA and tRNA genes, including the A boxes, are functionally gene-specific. J Biol Chem. 1991;266:8015–8019.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=1827115

1990


Austin B, Hall RM, Tyler BM. Optimized vectors and selection for transformation of Neurospora crassa and Aspergillus nidulans to bleomycin and phleomycin resistance. Gene. 1990;93:157–162.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=1699844

Austin B, Tyler BM. Strategies for high-efficiency cotransformation ofNeurospora crassa. Experimental Mycology. 1990;14:9–17.  http://www.sciencedirect.com/science/article/B6WFF-4HCKH2X-3/2/c40fc9cdd99c1a4dd9a7b2be41092b20

Moody SF, Tyler BM. Use of nuclear DNA restriction fragment length polymorphisms to analyze the diversity of the Aspergillus flavus group: A. flavus, A. parasiticus, and A. nomius. Appl Environ Microbiol. 1990;56:2453–2461.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=1976300

Moody SF, Tyler BM. Restriction enzyme analysis of mitochondrial DNA of the Aspergillus flavus group: A. flavus, A. parasiticus, and A. nomius. Appl Environ Microbiol. 1990;56:2441–2452.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=1976299

Tyler BM. Two complex regions, including a TATA sequence, are required for transcription by RNA polymerase I in Neurospora crassa. Nucleic Acids Res. 1990;18:1805–1811.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=2139932

Tyler BM, Harrison K. A Neurospora crassa ribosomal protein gene, homologous to yeast CRY1, contains sequences potentially coordinating its transcription with rRNA genes. Nucleic Acids Res. 1990;18:5759–5765.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=1977135

1989


Geever RF, Huiet L, Baum JA, et al. DNA sequence, organization and regulation of the qa gene cluster of Neurospora crassa. J Mol Biol. 1989;207:15–34.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=2525625

Shi YG, Tyler BM. Pyrrolidine, a non-controlled substance, can replace piperidine for the chemical sequencing of DNA. Nucleic Acids Res. 1989;17:3317.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=2726479

1987


Tyler BM. Transcription of Neurospora crassa 5 S rRNA genes requires a TATA box and three internal elements. J Mol Biol. 1987;196:801–811.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=2960818

1985


Giles NH, Case ME, Baum J, et al. Gene organization and regulation in the qa (quinic acid) gene cluster of Neurospora crassa. Microbiol Rev. 1985;49:338–358.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=2931582

Giles NH, Case ME, Baum JA, et al. Gene Organisation and Regulation in the qa (quinic acid) Gene Cluster of Neurospora crassa. In: Timberlake W, ed. Molecular Genetics of Filamentous Fungi. New York: Allan Liss; 1985:95–116.  

Tyler BM, Giles NH. Accurate transcription of cloned Neurospora RNA polymerase II-dependent genes in vitro by homologous soluble extracts. Proc Natl Acad Sci U S A. 1985;82:5450–5454.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=2991927

Tyler BM, Giles NH. Structure of a Neurospora RNA polymerase I promoter defined by transcription in vitro with homologous extracts. Nucleic Acids Res. 1985;13:4311–4332.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=2989792

1984


Huiet L, Tyler BM, Giles NH. A leucine tRNA gene adjacent to the QA gene cluster of Neurospora crassa. Nucleic Acids Res. 1984;12:5757–5765.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=6235483

Tyler BM, Geever RF, Case ME, Giles NH. Cis-acting and trans-acting regulatory mutations define two types of promoters controlled by the qa-1F gene of Neurospora. Cell. 1984;36:493–502.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=6198093

Tyler BM, Giles NH. Accurate transcription of homologous 5S rRNA and tRNA genes and splicing of tRNA in vitro by soluble extracts of Neurospora. Nucleic Acids Res. 1984;12:5737–5755.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=6235482

1983


Geever RF, Case ME, Tyler BM, Buxton F, Giles NH. Point mutations and DNA rearrangements 5' to the inducible qa-2 gene of Neurospora allow activator protein-independent transcription. Proc Natl Acad Sci U S A. 1983;80:7298–7302.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=6316356

Kemp DJ, Cowman AF, Gerondakis SD, et al. Processing of Immunoglobulin Heavy Chain Gene Transcripts. In: Nagley P, Linnane AW, Peacock WJ, Pateman JA, eds. Manipulation and Expression of Genes in Eukaryotes. Sydney: Academic Press; 1983:33–40.  

1982


Tyler BM, Cowman AF, Gerondakis SD, Adams JM, Bernard O. mRNA for surface immunoglobulin gamma chains encodes a highly conserved transmembrane sequence and a 28-residue intracellular domain. Proc Natl Acad Sci U S A. 1982;79:2008–2012.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=6804950

1981


Adams JM, Kemp DJ, Bernard O, et al. Organization and expression of murine immunoglobulin genes. Immunol Rev. 1981;59:5–32.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=6273295

Cory S, Kemp DJ, Bernard O, et al. Number and Organisation of Immunoglobulin Variable Region Genes in the Mouse. In: Janeway C, Sercarz EE, Wigzell H, eds. Immunoglobulin Idiotypes. New York: Academic Press; 1981:49–58.  

Cory S, Tyler BM, Adams JM. Sets of immunoglobulin V kappa genes homologous to ten cloned V kappa sequences: implications for the number of germline V kappa genes. J Mol Appl Genet. 1981;1:103–116.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=6286818

Kemp DJ, Tyler B, Bernard O, et al. Organization of genes and spacers within the mouse immunoglobulin VH locus. J Mol Appl Genet. 1981;1:245–261.  http://www.ncbi.nlm.nih.gov/pubmed/6286826

Tyler BM, Cowman AF, Adams JM, Harris AW. Generation of long mRNA for membrane immunoglobulin gamma 2a chains by differential splicing. Nature. 1981;293:406–408.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=7278993

1980


Adams JM, Gough NM, Webb EA, Tyler BM, Jackson J, Cory S. Molecular cloning of mouse immunoglobulin heavy chain messenger ribonucleic acids coding for mu, alpha, gamma 1, gamma 2a, and gamma 3 chains. Biochemistry. 1980;19:2711–2719.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=6249338

Gough NM, Kemp DJ, Tyler BM, Adams JM, Cory S. Intervening sequences divide the gene for the constant region of mouse immunoglobulin mu chains into segments, each encoding a domain. Proc Natl Acad Sci U S A. 1980;77:554–558.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=6767239

Tyler BM, Adams JM. Organization of the sequences flanking immunoglobulin heavy chain genes and their role in class switching. Nucleic Acids Res. 1980;8:5579–5598.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=6780980

Tyler BM, Adams JM. Enrichment of specific genes from genomic DNA or from clone library DNA, using R-looping. Gene. 1980;10:147–155.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=6248419

(not specified)


.