Virginia Bioinformatics Institute

Wednesday, 16 May 2012

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Garner, Harold , PE (Hon.)

Faculty - Publications - Garner, Harold

Director, Medical Informatics and Systems Division
Professor, Virginia Bioinformatics Institute
Professor, Department of Biological Science, Virginia Tech
Professor, Department of Computer Science, Virginia Tech
Professor, Department of Basic Science, Virginia Tech Carilion School of Medicine

Phone: (540) 231-2582
Email:garner@vbi.vt.edu
Fax:

Administrative Specialist: Maureen Lawrence-Kuether
Phone: (540) 231-3669
Email: mlawre04@vbi.vt.edu
Fax:540-231-2606

Personal_Page | Garner Research Group | Medical Informatics and Systems | Laboratory Web Site

Publications:

2012

Garner HR. Science publishing: How to stop plagiarism. Nature. 2012;481:21–23. http://dx.doi.org/10.1038%2F481021a

Rosenblatt KP, Huebschman ML, Garner HR. Construction and hyperspectral imaging of quantum dot lysate arrays. Methods Mol Biol. 2012;823:311–324. http://www.ncbi.nlm.nih.gov/pubmed/22081354

Tae H, Shallom S, Settlage R, Hawkins GN, Adams LG, Garner HR. Complete genome sequence of Brucella suis VBI22, isolated from bovine milk. J Bacteriol. 2012;194:910. http://www.ncbi.nlm.nih.gov/pubmed/22275106

2011

A. Acharya CPH S.N. Koenig H.A. Nichols C.L. Galindo H. R Garner W.H. Merrill R. B. Hinton and V. Garg. Inhibitory Role of Notch1 in Calcific Aortic Valve Disease. PLoS ONE. 2011.

Fisher WG, Lucas JE, Mehdi UF, et al. A Method for Isolation and Identification of Urinary Biomarkers in Patients with Diabetic Nephropathy. Proteomics Clin Appl. 2011. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=21956890

Galindo CL, McIver LJ, Tae H, et al. Sporadic breast cancer patients' germline DNA exhibit an AT-rich microsatellite signature. Genes Chromosomes Cancer. 2011. http://www.ncbi.nlm.nih.gov/pubmed/21240973

Garner HR. Combating unethical publications with plagiarism detection services. Urol Oncol. 2011;29(1):95–99. http://www.ncbi.nlm.nih.gov/pubmed/21194644

H. Tae SS R. Settlage D. Preston G. Adams H.R. Garner. Revised genome sequence of Brucella suis 1330. Journal of Bacteriology. 2011.

J.W. Uhr MLH E.P Frenkel N.L. Lane R. Ashfaq H. Y. Liu D. R. Rana L. Cheng A. T. Lin G. A. Hughes JXJ Zhang H.R. Garner. Molecular Profiling of Individual Tumor Cells by Hyperspectral Microscopic Imaging. Translational Research. 2011.

Lawhon SD, Khare S, Rossetti CA, et al. Role of SPI-1 secreted effectors in acute bovine response to Salmonella enterica Serovar Typhimurium: a systems biology analysis approach. PLoS One. 2011;6:e26869. http://www.ncbi.nlm.nih.gov/pubmed/22096503

McIver LJ, Fondon JW 3rd, Skinner MA, Garner HR. Evaluation of microsatellite variation in the 1000 Genomes Project pilot studies is indicative of the quality and utility of the raw data and alignments. Genomics. 2011. http://www.ncbi.nlm.nih.gov/pubmed/21223998

Rossetti CA, Galindo CL, Garner HR, Adams LG. Transcriptional profile of the intracellular pathogen Brucella melitensis following HeLa cells infection. Microb Pathog. 2011;51:338–344. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=21798337

Shallom SJ, Weeks JN, Galindo CL, et al. A species independent universal bio-detection microarray for pathogen forensics and phylogenetic classification of unknown microorganisms. BMC Microbiol. 2011;11:132. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=21672191

2010

Galindo CL, McCormick JF, Bubb VJ, et al. A long AAAG repeat allele in the 5' UTR of the ERR-gamma gene is correlated with breast cancer predisposition and drives promoter activity in MCF-7 breast cancer cells. Breast Cancer Res Treat. 2010. http://www.ncbi.nlm.nih.gov/pubmed/21153485

Galindo CL, Sha J, Moen ST, et al. Comparative Global Gene Expression Profiles of Wild-Type Yersinia pestis CO92 and Its Braun Lipoprotein Mutant at Flea and Human Body Temperatures. Comp Funct Genomics. 2010:342168. http://www.ncbi.nlm.nih.gov/pubmed/20508723

George AC, Long TC, Garner HR. Quaere verum. Clin Chem. 2010;56:673–674. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=20093558

Huebinger RM, Garner HR, Barber RC. Pathway genetic load allows simultaneous evaluation of multiple genetic associations. Burns. 2010. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=20381257

Rossetti CA, Galindo CL, Everts RE, Lewin HA, Garner HR, Adams LG. Comparative analysis of the early transcriptome of Brucella abortus – Infected monocyte-derived macrophages from cattle naturally resistant or susceptible to brucellosis. Res Vet Sci. 2010. http://www.ncbi.nlm.nih.gov/pubmed/20932540

Rossetti CA, Galindo CL, Garner HR, Adams LG. Selective amplification of Brucella melitensis mRNA from a mixed host-pathogen total RNA. BMC Res Notes. 2010;3:244. http://www.ncbi.nlm.nih.gov/pubmed/20920187

Sun Z, Errami M, Long T, Renard C, Choradia N, Garner H. Systematic characterizations of text similarity in full text biomedical publications. PLoS One. 2010;5(9):e12704. http://www.ncbi.nlm.nih.gov/pubmed/20856807

Weeks JN, Galindo CL, Drake KL, Adams GL, Garner HR, Ficht TA. Brucella melitensis VjbR and C12-HSL regulons: contributions of the N-dodecanoyl homoserine lactone signaling molecule and LuxR homologue VjbR to gene expression. BMC Microbiol. 2010;10:167. http://www.ncbi.nlm.nih.gov/pubmed/20529360

2009

Errami M, Sun Z, Long TC, George AC, Garner HR. Deja vu: a database of highly similar citations in the scientific literature. Nucleic Acids Res. 2009;37:D921–4. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18757888

Galindo CL, McIver LJ, McCormick JF, et al. Global microsatellite content distinguishes humans, primates, animals, and plants. Mol Biol Evol. 2009;26:2809–2819. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19717526

Galindo CL, Moen ST, Kozlova EV, et al. Comparative Analyses of Transcriptional Profiles in Mouse Organs Using a Pneumonic Plague Model after Infection with Wild-Type Yersinia pestis CO92 and Its Braun Lipoprotein Mutant. Comp Funct Genomics. 2009;2009:914762. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=20145715

Galindo CL, Skinner MA, Errami M, et al. Transcriptional profile of isoproterenol-induced cardiomyopathy and comparison to exercise-induced cardiac hypertrophy and human cardiac failure. BMC Physiol. 2009;9:23. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=20003209

Garner 180. HR. Global Microsatellite Survey: discovery of a polymorphic AAAG repeat in Estrogen Related Receptor g gene that may correlate with heritable cancers. Center FHC, ed. Seattle; 2009.

Garner HR. Universal Applications and Data Challenges DTRA/NSF, ed.; 2009.

Garner HR. Whole-genome microsatellite scans of primates are revealing of neurological genes. Meeting T in PG, ed. Breckenridge; 2009.

Garner HR. A Study of Highly Similar and Duplicate Citations via Computer-based Text Mining and Manual Verification. Conference HHSO of RIA, ed. Buffalo; 2009.

Garner HR. Medical Technology Overview. Agency DTR, ed. Washington, DC; 2009.

Garner HR. Quantitative ImmunoFluorescence enabled by highly multiplexed hyperspectral imaging microscopy, custom reagents and advanced software. Pathology AS for I, ed. New Orleans; 2009.

Garner HR. Foreign Animal Zoonotic Disease Center. Array UBDAUB-SD, ed. College Station; 2009.

Garner HR. Characterizing Publication Integrity. Center FHC, ed. Seattle; 2009.

Garner HR. Universal Applications and Data Challenges DTRA/NSF, ed.; 2009.

Garner H. Biotech 101. Chemists AM of C, ed. Dallas; 2009.

Garner H. Driving oncology services business with text data mining. Oncology US, ed. Ft. Worth; 2009.

H.R.Garner. Identifying Relations in Text: Applications to Generating and Verifying Hypotheses in Drug Discovery. Keynote speaker IC on BO, ed. Buffalo, NY; 2009.

H.R.Garner. Trail to Invention. (UT) S of WE, ed. Dallas; 2009.

Harold R. Garner AJ Michael L. Huebschman Surya Shandy Sandhya N. Mitnala Brandi Wallek Season Wong. Dynamic high-resolution patterning for biomedical, materials, and semiconductor research. SPIE Bios09. 2009;#7210-1.

Long TC, Errami M, George AC, Sun Z, Garner HR. Scientific integrity. Responding to possible plagiarism. Science. 2009;323:1293–1294. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19265004

Michael L. Huebschman KPR and Harold R. Garner. Hyperspectral microscopy imaging to analyze pathology samples with multi-colors reduces time and cost. SPIE Bios09. 2009;#7182-50.

Miller D J A and Garner HR. Cells have high resolution light sensing capability that can be used to control aspects of their behavior. IEEE Engineering in Biology and Medicine. 2009;January/February.

Rossetti CA, Galindo CL, Lawhon SD, Garner HR, Adams LG. Brucella melitensis global gene expression study provides novel information on growth phase-specific gene regulation with potential insights for understanding Brucella:host initial interactions. BMC Microbiol. 2009;9:81. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19419566

Tan NC, Fisher WG, Rosenblatt KP, Garner HR. Application of multiple statistical tests to enhance mass spectrometry-based biomarker discovery. BMC Bioinformatics. 2009;10:144. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19442303

2008

Bosnakovski D, Xu Z, Gang EJ, et al. An isogenetic myoblast expression screen identifies DUX4-mediated FSHD-associated molecular pathologies. Embo J. 2008;27:2766–2779. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18833193

Deus HF, Stanislaus R, Behrens C, et al. Data driven semantic integration of translational lung cancer research at MDAnderson Cancer Center. AMIA Annu Symp Proc. 2008:927. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18999102

Deus HF, Stanislaus R, Veiga DF, et al. A Semantic Web management model for integrative biomedical informatics. PLoS One. 2008;3:e2946. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18698353

Errami M, Galindo CL, Tassa AT, Dimaio JM, Hill JA, Garner HR. Doxycycline attenuates isoproterenol- and transverse aortic banding-induced cardiac hypertrophy in mice. J Pharmacol Exp Ther. 2008;324:1196–1203. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18089841

Errami M, Garner H. A tale of two citations. Nature. 2008;451:397–399. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18216832

Errami M, Hicks JM, Fisher W, et al. Deja vu--a study of duplicate citations in Medline. Bioinformatics. 2008;24:243–249. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18056062

Garner 195. HR. Microsatellite Genomics and Plagarism and multiple manuscript publication. Conference PG, ed. St. Petersburg, Russia; 2008.

Garner HR. Applied computational biology: Some examples and a promising future. Department UNCG, ed.; 2008.

Garner HR. Dynamic high resolution patterning for biomedical, materials and semiconductor research. Texas Instruments MEMSS, ed. Dallas; 2008.

Garner HR. Translating Genomic Research into Medical Applications. Conference BE, ed.; 2008.

Kulkarni V, Errami M, Barber R, Garner HR. Exhaustive prediction of disease susceptibility to coding base changes in the human genome. BMC Bioinformatics. 2008;9 Suppl 9:S3. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18793467

Loadsman JA, Garner HR, Drummond GB. Towards the elimination of duplication in Anaesthesia and Intensive Care. Anaesth Intensive Care. 2008;36:643–645. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18853580

Marthandan N, Klyza S, Li S, Kwon YU, Kodadek T, Garner HR. Construction and evaluation of an automated light directed protein-detecting microarray synthesizer. IEEE Trans Nanobioscience. 2008;7:20–27. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18334452

Moen ST, Yeager LA, Lawrence WS, et al. Transcriptional profiling of murine organ genes in response to infection with Bacillus anthracis Ames spores. Microb Pathog. 2008;44:293–310. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18037264

Wagner MW, Li LS, Morales JC, et al. Role of c-Abl kinase in DNA mismatch repair-dependent G2 cell cycle checkpoint arrest responses. J Biol Chem. 2008;283:21382–21393. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18480061

Weil MR GC and Garner H. A high resolution survey of the effects of 5 Aza dC treatment on the chromatin state of MCF7 breast cancer cells. IEEE Eng Med Biol Mag.. 2008;July-August 2008:86–100.

Zhang F, Sha J, Wood TG, et al. Alteration in the activation state of new inflammation-associated targets by phospholipase A2-activating protein (PLAA). Cell Signal. 2008;20:844–861. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18291623

2007

Burkart MF, Wren JD, Herschkowitz JI, Perou CM, Garner HR. Clustering microarray-derived gene lists through implicit literature relationships. Bioinformatics. 2007;23:1995–2003. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17537751

Cabrera JA H-KK Calver L Garner HR. Expanding Researchers. Jbc. 2007;33:E62–E67.

Crozier SP, Garner HR. Ensemble-based RNA secondary structure characterization. IEEE Eng Med Biol Mag. 2007;26:72–86. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17278775

Errami M, Wren JD, Hicks JM, Garner HR. eTBLAST: a web server to identify expert reviewers, appropriate journals and similar publications. Nucleic Acids Res. 2007;35:W12–5. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17452348

Fadl AA, Galindo CL, Sha J, et al. Global transcriptional responses of wild-type Aeromonas hydrophila and its virulence-deficient mutant in a murine model of infection. Microb Pathog. 2007;42:193–203. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17368824

Fisher WG, Rosenblatt KP, Fishman DA, et al. A robust biomarker discovery pipeline for high-performance mass spectrometry data. J Bioinform Comput Biol. 2007;5:1023–1045. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17933009

Fondon JW 3rd, Garner HR. Detection of length-dependent effects of tandem repeat alleles by 3-D geometric decomposition of craniofacial variation. Dev Genes Evol. 2007;217:79–85. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17066275

Garner HR. Array based measurements of microsatellite instability. Nimblegen I, ed. Madison, Wisc; 2007.

Garner HR. D. Department UTSWS, ed.; 2007.

Garner HR. Text similarity searching and data mining of Medline: from studies in ethics to drug discovery. National Library of Medicine NIH, ed.; 2007.

Garner HR. Microsatellites and Breast Cancer. DC BCS in W, ed. Washington, DC; 2007.

Garner HR. Collaborative Approaches for Biomedical Research and Homeland Security. MAGPI Forum IVC, ed.; 2007.

Garner HR. Data mining driven drug discovery. Cogentus, ed. San Francisco; 2007.

Garner HR. Role of microsatellite instability in cancer, The design, analysis and interpretation of custom microarrays. London; 2007. Publication Ethics.

Garner HR, Hicks J, Wren JD, Errami M. Medline: the knowledge buried therein, its potential, and cost. IEEE Eng Med Biol Mag. 2007;26:73–74. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17549924

German DC, Gurnani P, Nandi A, et al. Serum biomarkers for Alzheimer's disease: proteomic discovery. Biomed Pharmacother. 2007;61:383–389. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17614251

Khandheria P, Garner HR. Developing a modern web interface for database-driven bioinformatics tools. IEEE Eng Med Biol Mag. 2007;26:96–98. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17441614

Ng KW, Garner HR. Nome della Proteina: a protein identification resolution database. IEEE Eng Med Biol Mag. 2007;26:70–72. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17672234

Ragucci TJ CA Huebschman ML and Garner HR. Film Strain Measurement through Hyperspectral Polarimetry. Proceedings of American Institute of Aeronautics and Astronautics. 2007.

Shah JK, Garner HR, White MA, Shames DS, Minna JD. sIR: siRNA Information Resource, a web-based tool for siRNA sequence design and analysis and an open access siRNA database. BMC Bioinformatics. 2007;8:178. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17540034

2006

Comer JE, Galindo CL, Zhang F, et al. Murine macrophage transcriptional and functional responses to Bacillus anthracis edema toxin. Microb Pathog. 2006;41:96–110. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16846716

Flood EM, Kumar RS, Shah R, et al. Melatonin administration does not affect isoproterenol-induced LVH. IEEE Eng Med Biol Mag. 2006;25:84–87. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16764435

Garner HR. Discovery of new cosmetic compounds with data mining. Cosmetics MK, ed. Dallas; 2006.

Garner HR. Holographic Visualization. Astrophysics JI for L, ed. Boulder; 2006.

Garner HR. Development of a 3D visualization system. Missouri U of, ed.; 2006.

Garner HR. Development of a Holographic Visualization System. Department UTAP, ed.; 2006.

Garner HR. VNTRs in bioinformatics and evolution. meeting M 2006, ed. Budapest, Hungary; 2006.

Lewis J, Ossowski S, Hicks J, Errami M, Garner HR. Text similarity: an alternative way to search MEDLINE. Bioinformatics. 2006;22:2298–2304. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16926219

2005

Ferguson DA, Muenster MR, Zang Q, et al. Selective identification of secreted and transmembrane breast cancer markers using Escherichia coli ampicillin secretion trap. Cancer Res. 2005;65:8209–8217. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16166296

Garner HR. Keynote Speech. conference NSFEPSCRFG, ed. Stillwater, OK; 2005.

Geho D, Lahar N, Gurnani P, et al. Pegylated, steptavidin-conjugated quantum dots are effective detection elements for reverse-phase protein microarrays. Bioconjug Chem. 2005;16:559–566. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15898722

Huebschman ML MB Hunt J Garner HR. Holographic visualization with micromirror devices. Spie. 2005;June 16.

Li S, Marthandan N, Bowerman D, Garner HR, Kodadek T. Photolithographic synthesis of cyclic peptide arrays using a differential deprotection strategy. Chem Commun (Camb). 2005:581–583. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15672142

Lian Y, Garner HR. Evidence for the regulation of alternative splicing via complementary DNA sequence repeats. Bioinformatics. 2005;21:1358–1364. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15673565

Mizumoto N, Hui F, Edelbaum D, et al. Differential activation profiles of multiple transcription factors during dendritic cell maturation. J Invest Dermatol. 2005;124:718–724. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15816829

Munjuluri B, Huebschman ML, Garner HR. Rapid hologram updates for real-time volumetric information displays. Appl Opt. 2005;44:5076–5085. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16121792

Wren JD, Chang JT, Pustejovsky J, Adar E, Garner HR, Altman RB. Biomedical term mapping databases. Nucleic Acids Res. 2005;33:D289–93. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15608198

Wren JD, Garner HR. Data-mining analysis suggests an epigenetic pathogenesis for type 2 diabetes. J Biomed Biotechnol. 2005;2005:104–112. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16046815

2004

Belosludtsev YY, Bowerman D, Weil R, et al. Organism identification using a genome sequence-independent universal microarray probe set. Biotechniques. 2004;37:654–8, 660. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15517977

Cronin EM, Thurmond FA, Bassel-Duby R, et al. Protein-coated poly(L-lactic acid) fibers provide a substrate for differentiation of human skeletal muscle cells. J Biomed Mater Res A. 2004;69:373–381. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15127383

Fondon JW 3rd, Garner HR. Molecular origins of rapid and continuous morphological evolution. Proc Natl Acad Sci U S A. 2004;101:18058–18063. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15596718

Li S, Bowerman D, Marthandan N, et al. Photolithographic synthesis of peptoids. J Am Chem Soc. 2004;126:4088–4089. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15053581

Luebke KJ, Carter DE, Garner HR, Brown KC. Patterning adhesion of mammalian cells with visible light, tris(bipyridyl)ruthenium(II) chloride, and a digital micromirror array. J Biomed Mater Res A. 2004;68:696–703. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14986324

M. Ryan Weil KPR and HRG. Analysis of Serum Protein Patterns in Cancer Patients. GeneSpring Application Note, Silicon Genetics. 2004.

M.L. Huebschman JH B. Munjuluri A. Takashima and H.R. Garner. Design and performance of a variable spectrum synthesizer. Journal of Review of Scientific Instruments. 2004;Volume 75:4845–4855.

Ng KW, Lawson J, Garner HR. PathoGene: a pathogen coding sequence discovery and analysis resource. Biotechniques. 2004;37:218, 220–2. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15335212

Pertsemlidis A, Garner HR. Text comparison based on dynamic programming. IEEE Eng Med Biol Mag. 2004;23:66–71. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15688594

Schageman JJ, Horton CJ, Niu S, Garner HR, Pertsemlidis A. ELXR: a resource for rapid exon-directed sequence analysis. Genome Biol. 2004;5:R36. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15128450

Wandstrat AE, Nguyen C, Limaye N, et al. Association of extensive polymorphisms in the SLAM/CD2 gene cluster with murine lupus. Immunity. 2004;21:769–780. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15589166

Weil MR, Widlak P, Minna JD, Garner HR. Global survey of chromatin accessibility using DNA microarrays. Genome Res. 2004;14:1374–1381. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15231753

Wren JD, Bekeredjian R, Stewart JA, Shohet RV, Garner HR. Knowledge discovery by automated identification and ranking of implicit relationships. Bioinformatics. 2004;20:389–398. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14960466

Wren JD, Garner HR. Shared relationship analysis: ranking set cohesion and commonalities within a literature-derived relationship network. Bioinformatics. 2004;20:191–198. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14734310

2003

A GHR, Pertsemlidis. Applied Computational Biology. BioSilico. 2003.

Garner HR. Instrumentation for Genome Analysis (and beyond) based on the TI Digital Micromirror Device. Dallas, TX; 2003. proceedings of the IEEE International Reliability Physics Symposium.

Horvath MM, Fondon JW 3rd, Garner HR. Low hanging fruit: a subset of human cSNPs is both highly non-uniform and predictable. Gene. 2003;312:197–206. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12909356

Huebschman ML MB and Garner HR. Dynamic Holographic 3-D Image Projection. Optics Express. 2003;11:437–445.

Luebke KJ, Balog RP, Garner HR. Prioritized selection of oligodeoxyribonucleotide probes for efficient hybridization to RNA transcripts. Nucleic Acids Res. 2003;31:750–758. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12527785

Peters DL, Barber RC, Flood EM, Garner HR, O'Keefe GE. Methodologic quality and genotyping reproducibility in studies of tumor necrosis factor -308 G-->A single nucleotide polymorphism and bacterial sepsis: implications for studies of complex traits. Crit Care Med. 2003;31:1691–1696. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12794406

Schageman JJ, Ferguson DA, Zang Q, et al. Reading the fine print of the human genome. IEEE Eng Med Biol Mag. 2003;22:105–108. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12733468

Tang F, Flood EM, Pertsemlidis A, Garner HR. SNPCEQer II: the integrated detection and analysis of SNPs in DNA sequences. Appl Bioinformatics. 2003;2:151–154. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15130800

2002

Balog RP, de Souza YE, Tang HM, et al. Parallel assessment of CpG methylation by two-color hybridization with oligonucleotide arrays. Anal Biochem. 2002;309:301–310. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12413464

Flood EM, Tang F, Horvath MM, Pertsemlidis A, Garner HR. SNPCEQer: detecting SNPs in sequences generated by the Beckman CEQ2000 DNA Analysis System. Biotechniques. 2002;33:814, 816, 818–20 passim. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12398190

Flood EM, Tang F, Horvath MM, Pertsemlidis A, Garner HR. SNPCEQer: Detecting SNPs in sequences generated by the Beckman CEQTM2000 DNA Analysis System. Biotechniques. 2002;33:814–822.

Garner HR, Balog RP, Luebke KJ. The evolution of custom microarray manufacture. IEEE Eng Med Biol Mag. 2002;21:123–125. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12222110

Huebschman ML, Schultz RA, Garner HR. Characteristics and capabilities of the hyperspectral imaging microscope. IEEE Eng Med Biol Mag. 2002;21:104–117. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12222107

Jeoffrey Schageman AP and HG. Shotgun assembly with the CEQ2000XL using Phred, Phrap and Consed. Beckman-Coulter. 2002.

Kulkarni AV, Williams NS, Lian Y, et al. ARROGANT: an application to manipulate large gene collections. Bioinformatics. 2002;18:1410–1417. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12424110

Schageman JJ, Basit M, Gallardo TD, Garner HR, Shohet RV. MarC-V: A spreadsheet-based tool for analysis, normalization, and visualization of single cDNA microarray experiments. Biotechniques. 2002;32:338–344.

Talaat AM, Howard ST, Hale W th, Lyons R, Garner H, Johnston SA. Genomic DNA standards for gene expression profiling in Mycobacterium tuberculosis. Nucleic Acids Res. 2002;30:e104. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12384606

Weil MR, Macatee T, Garner HR. Toward a universal standard: comparing two methods for standardizing spotted microarray data. Biotechniques. 2002;32:1310–1314. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12074161

Wren JD, Garner HR. Heuristics for identification of acronym-definition patterns within text: towards an automated construction of comprehensive acronym-definition dictionaries. Methods Inf Med. 2002;41:426–434. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12501816

Wren JD, Kulkarni A, Joslin J, Butow RA, Garner HR. Cross-hybridization on PCR-spotted microarrays. IEEE Eng Med Biol Mag. 2002;21:71–75. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12012609

Wren JD, Mittelman DA, Garner HR. SIGNAL-Sequence Information and GeNomic AnaLysis. Comput Methods Programs Biomed. 2002;68:177–181. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11932033

2001

Epstein CB, Waddle JA, Hale W th, et al. Genome-wide responses to mitochondrial dysfunction. Mol Biol Cell. 2001;12:297–308. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11179416

Forgacs E, Wren JD, Kamibayashi C, et al. Searching for microsatellite mutations in coding regions in lung, breast, ovarian and colorectal cancers. Oncogene. 2001;20:1005–1009. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11314036

Lander ES, Linton LM, Birren B, et al. Initial sequencing and analysis of the human genome. Nature. 2001;409(6822):860–921. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11237011

Schultz RA, Nielsen T, Zavaleta JR, Ruch R, Wyatt R, Garner HR. Hyperspectral imaging: a novel approach for microscopic analysis. Cytometry. 2001;43:239–247. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11260591

2000

Kukanskis KA, Siddiquee Z, Shohet RV, Garner HR. Mix of sequencing technologies for sequence closure: an example. Biotechniques. 2000;28:630–2, 634. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10769739

Liao B HW Epstein CB Butow RA Garner HR. MAD: a suite of tools for microarray data management and processing. BioInformatics. 2000;16:946–947.

Miller GA BY Murphy TH Garner HR. Transparent Electronically Controlled DNA Chips. Biomedical Microdevices. 2000;2:215–220.

Pertsemlidis A, Pande A, Miller B, et al. PANORAMA: an integrated Web-based sequence analysis tool and its role in gene discovery. Genomics. 2000;70:300–306. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11161780

Wistuba II, Behrens C, Virmani AK, et al. High resolution chromosome 3p allelotyping of human lung cancer and preneoplastic/preinvasive bronchial epithelium reveals multiple, discontinuous sites of 3p allele loss and three regions of frequent breakpoints. Cancer Res. 2000;60:1949–1960. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10766185

Wren JD, Forgacs E, Fondon JW 3rd, et al. Repeat polymorphisms within gene regions: phenotypic and evolutionary implications. Am J Hum Genet. 2000;67:345–356. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10889045

1999

Kukanskis K, Elkind J, Melendez J, Murphy T, Miller G, Garner H. Detection of DNA hybridization using the TISPR-1 surface plasmon resonance biosensor. Anal Biochem. 1999;274:7–17. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10527491

1998

Collins FS, Patrinos A, Jordan E, Chakravarti A, Gesteland R, Walters L. New goals for the U.S. Human Genome Project: 1998-2003. Science. 1998;282(5389):682–689. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9784121

Fondon JW 3rd, Mele GM, Brezinschek RI, et al. Computerized polymorphic marker identification: experimental validation and a predicted human polymorphism catalog. Proc Natl Acad Sci U S A. 1998;95:7514–7519. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9636181

Huang H, Garner HR. Gene Alert--a sequence search results keyword parser. IEEE Eng Med Biol Mag. 1998;17:119–22, 128. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9548090

O'Brien KM, Ironside MA, Athanasiou MC, Basit MA, Evans GA, Garner HR. Correcting data shifts in gel files created by Model 377 DNA Sequencers. Biotechniques. 1998;24:1002–1003. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9631193

O'Brien KM, Schageman JJ, Evans GA, Garner HR. Reconstructing fragmented gel files created by Model 377 DNA Sequencers. Biotechniques. 1998;24:1004–1005. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9631194

O'Brien KM, Schageman JJ, Major TH, Evans GA, Garner HR. Improving read lengths by recomputing the matrices of Model 377 DNA Sequencers. Biotechniques. 1998;24:1014–1016. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9631196

Rayner S, Brignac S, Bumeister R, et al. MerMade: an oligodeoxyribonucleotide synthesizer for high throughput oligonucleotide production in dual 96-well plates. Genome Res. 1998;8:741–747. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9685322

1997

Garner HR. Viewpoint: The Human Genome Project: on target for 2006. IEEE Spectrum. 1997;January 1997:99–102.

K. O. Rescuing Corrupted ABI-type gel files. BioTechniques. 1997;Vol. 22:1162–1163.

P. Li CJD D. North P. Schilling G. A. Evans and H. R. Garner. Supercomputing in genomic sequencing: Optimization of BLAST and other sequence algorithms for high speed parallel processing. Scientific Computing and Automation. 1997.

P. Li KK C. Davies D. Burbee G. A. Evans and H. R. Garne. PRIMO: A Primer Design Program that Applies Base Quality Statistics for Automated Large-Scale DNA Sequencing. Genomics. 1997;40:476–485.

1996

Garner HR. What is Chromosome Walking.; 1996. Scientific American, Ask the Experts.

H.R.Garner. Fluorometer to Spectrophotometer Converter. Review of Scientific Instruments. 1996;67.

T.B. Shows MA S. Bennett D. Burbee P. Cartwright S. Chandrasekharappa P. Cooper A. Courseaux C. Davies M.-D. Devignes P. Devilee R. Elliott G. Evans J. Fantes H. Garner P. Gaudray D.S. Gerhard M. Gessler M. Higgins H. Hummerich M. James J. Lagercrantz M. Litt P. Little M. Mannens D. Munroe N. Nowak S. O. Report of the fifth international workshop on human chromosome 11 mapping. Cytogenetics and Cell Genetics. 1996;74:1–56.

1995

H.R.Garner. Can informatics keep pace with molecular biology? Laboratory Information Management. 1995;26:69–77.

J. Quackenbush CD J. M. Baliks J. V. Khristich K. Diggle Y. Marchuck J. Tobin S. P. Clark A. Rodkins S. Marcano A. C. Churukian J. S. Hutchinson S. Probst L. Romberg Y. H. Wei N. J. Nowak H. R. Garner M. W. Smith L. Selleri and G. A. Evans. An STS Content Map of Human Chromosome 11: Localization of 910 YAC Clones and 109 Islands. Genomics. 1995;29:512–525.

1994

Garner HR. Automating the Genome Center. IEEE Engineering in Medicine and Biology. 1994;12:281–283.

Garner HR. Coordinating Robotics and Informatics in the Industrial and Research Laboratory.; 1994. 3rd International Conference on Automation, Robotics and Artificial Intelligence applied to Analytic.

Garner HR. Instrumentation and Informatics Tools for Rapid Genomic or Diagnostic Analysis via PCR. San Francisco; 1994. PCR and Alternative Amplification Technologies for Diagnostics.

Garner H. Advances in Automated DNA Sequencing. Implications HGP: C, ed.; 1994.

1993

Garner HR. Information Processing and the Demands of Molecular Biology. Laboratory 1993 CCC on AAC for the C, ed. Oak Ridge, TN; 1993.

Garner HR. Advanced Instrumentation, Automation and Informatics for the Human Genome Project, General Biology and Medicine. Oak Ridge, TN; 1993. Fusion Power Associates – Technology Transfer Symposium,.

Garner HR. Lab Automation in the Human Genome Project. Washington, DC; 1993. Scientific Computing & Automation Conference.

H.R. Garner DML and BA. High-throughput PCR. BioTechniques. 1993;14:112–115.

1992

Garner BA and HR. Analysis of Protocol Variations on DNA Yield. Gata. 1992;9:134–139.

Garner HR. Prototype Automated Instrumentation for the Human Genome Project. Washington, DC; 1992. Scientific Computing & Automation conference.

H. R. Garner BA D. Kramarsky G. Evans(Salk) and K. Snyder(Salk). Development and Application of New, High-Throughput Automation for Large Scale Physical Mapping of Human Chromosomes. Cold Spring Harbor; 1992. Cold Spring Harbor Mapping and Sequencing meeting.

H.R. Garner BA and DK. High-Throughput DNA Prep System. Gata. 1992;9:127–133.

1991

Fishwild DM, Staskawicz MO, Wu HM, Carroli SF. Cytotoxicity against human peripheral blood mononuclear cells and T cell lines mediated by anti-T cell immunotoxins in the absence of added potentiator. Clin Exp Immunol. 1991;86(3):506–513. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=1747958

H.R. Garner ACL and T. Ohkawa. Measurement of the Microwave Absorption for Small Samples in a Coaxial Line. IEEE Transactions in Microwave Theory and Techniques. 1991;39.

H.R. Garner MAA. The Macintosh Autorad Seqence System.; 1991. AIP Conference on Computational Physics.

H.R. Garner TO O. Tuason R.L. Lee. Properties of the Hydration Layer Studied with Microwave Absorption Spectroscopy.; 1991. Thirty Fifth Annual Meeting of the Biophysical Society.

J.C. Anderson MHS H.R. Garner and L. Peranich. Ultra-Microcell for Spectrometric Measurement of Microvolume Samples. Beckman Technical Information Bulletin. 1991.

Lewis HRG and AC. Variable Frequency Cavity for Measurements of Complex Permittivity and Permeability. IEEE Transactions in Microwave Theory and Techniques. 1991.

1990

H.R. Garner ACL and M.K. Thomas. Micropipette Adaptor for Spectrophotometers. Rev. Sci. Instrum. 1990;61.

H.R. Garner AMH L.S. Peranich A.W. Leonard T. Ohkawa J. D'Aoust. An Inexpensive X-ray Source Based on an Electron Cyclotron. Rev. Sci. Instrum. 1990;61.

H.R. Garner JLK R.B. Stephens A.C. Lewis A.J. Lieber W.J. DeHope. Measurement of Permittivity at Elevated Temperatures Using Cavity Perturbation and CO2 Laser Irradiation. Rev. Sci. Instrum. 1990;61.

H.R. Garner OT R.L. Lee. Oligonucleotide Properties Measured with Fluorescence. San Diego; 1990. The Fifth San Diego Conference, Nucleic Acids: New Frontiers, American Association of Clinical Chemi.

H.R. Garner TO O. Tuason and R.L Lee. Microwave Absorption in the Hydration Layers of Polymers. Phys. Rev. A.. 1990;42.

1988

A.M. Howald DRB T.E. Evans H.R. Garner A.W. Hyatt A.W. Leonard L.S. Peranich A. Mohri Y Hamada K. Kawahata and the JIPP TII-U Group. Increased Collection Efficiency of the HIDEX Pump Limiter on JIPP TII-U. Bulletin of the American Physical Society. 1988;33.

A.W. Leonard DRB T.E. Evans H.R. Garner A.M. Howald L.S. Peranich A. Mohri S. Okamura and the JIPP TII-U Group. Heat Loading and Plasma Interaction on the Hidex Pumped Limiter in the JIPP TII-U Tokamak. Bulletin of the American Physical Society. 1988;33.

A.W. LeonardA. Mohri OK T.E. Evans N. Ohyabu Y.Hamada K. Kawahata J.S. deGrassie L.S. Peranich K. Ida H.R. Garner. Resonant helical divertor experiments in ohmic and auxiliary heated JIPP T-IIU plasmas. Julich, Federal Republic of Germany: General Atomics; 1988. 8th International Conference on Plasma Surface Interactions.

H. Fujita RK A.M. Howald S. Okamura T. Sato K. Adati H.R. Garner and K. Nishimura. Potential Formation in the Plasma Confinement Region of a Radio-Frequency Plugged Linear Device. J. Phys. Soc. Japan. 1988;57.

K. Adati RK H. Fujita T. Oda K. Kadota K. Takiyama M. Hamamoto T. Ohgo T. Watanabe T. Aoki J. Fujita S. Hidekuma T. Kawamoto H. Masumoto K. Nishimura S. Okamura T. Sato H.R. Garner A.M. Howald. Potential Formation in an RF-Plugged Axisymmetric Mirror-Cusp Device. Nice; 1988. 12th International Conference on Plasma Physics and Controlled Nuclear Fusion Research Iaea-Cn-50.

L.S. Peranich DRB T.E. Evans H.R. Garner A.M. Howald A.W. Leonard A.. Mohri S. Okamura and the JIPP TII-U group. Pump Limiter Experiments on the JIPP TII-U Tokamak. Bulletin of the American Physical Society. 1988;33.

R. Kumazawa KA T. Aoki H. Fujita S. Hidekuma T. Kawamoto H. Nishimura S. Okamura T. Sato T. Hatori H.R. Garner A.M. Howald and B. J. Leikind. Scaling Studies on RF Plugging Potential in the Cusp-Anchored Mirror Device, RFC-XX-M. Phys. Soc. Japan. 1988;57.

Staff P. Mirror Confinement Systems Final Technical Report.; 1988.

T.E. Evans JS deG H.R. Garner A.W. Leonard N. Ohyabu L S. Peranich A. Mohri Y. Hamada K. Ida O. Kaneko K. Kawahata S. Kitagawa T. Kuroda K. Madai S. Morita Y. Ogawa S. Okamura K.N. Sato M. Sakamoto H. Yamada K. Yamazaki T. Watari the ICRF NBI and JIPP T-IIU Operations groups and F. Karger. Resonant Helical Divertor Experiments in Ohmic and Auxiliary Heated JIPP T-IIU Plasmas," Journal of Nuclear Materals, (8th International Conference on Plasma Surface Interactions.; 1988. 8th International Conference on Plasma Surface Interactions; Journal of Nuclear Materals.

T.E. Evans KA A. Ando D.R. Baker J. deGrassie H.R. Garner Y. Hamada S. Hidekuma A.M. Howald K. Ida O. Kaneko K. Kawahata S. Kitagawa T. Kumazawa T. Kuroda A.W. Leonard K. Masai K. Matsuura A. Mohri S. Morita Y. Ogawa S. Okamura T. Ozaki L.S. Peranich M. Sakamoto K.N. Sato S. Tanahashi K. Toi Y. Tomita T. Watari H. Yamada K. Yamazaki the ICRF NBI and NTX Operations groups. Resonant Helical Divertor Experiment Using Large m/n = 3/1, 4/1 Islands in the JIPP T-IIU Tokamak. Nice; 1988:347–352. 12th International Conference on Plasma Physics and Controlled Nuclear Fusion Research Iaea-Cn-50.

1987

Howald DB J. deGrassie T. Evans H.R. Garner N. Ohyabu L. Peranich A. Mohri Y. Hamada Y. Ogawa S. Okamura K. Yamazaki K. Kawahata and the NTX Group. Measurements near the q=3 Surface in the NTX (JIPP TII-U) Tokamak during Resonant m=3 Helical Magnetic Field Operation. Bulletin of the American Physical Society. 1987;32.

T.E. Evans DRB W. Bard J.S. DeGrassie H.R. Garner A.M. Howald N. Ohyabu L. Peranich Y. Hamada S. Hidekuma A. Mohri Y. Ogawa S. Okamura K. Yamazaki and the NTX Group. Resonant Helical Divertor Experiments on the NTX (JIPP TII-U) Tokamak. Bulletin of the American Physical Society. 1987;32.

1986

A.M. Howald HRG B.J. Leikind H. Fujita. Heavy Ion Beam Probe for Space Potential Measurements on RFC-XX-M. Bulletin of the American Physical Society. 1986;31.

B.J. Leikind HRG A.M. Howald P. Parks and the RFC-XX-M Group. Recent Results from n-mode Operation of RFC-XX-M. Bulletin of the American Physical Society. 1986;31.

Group TS and the RFC-XX-M. International Cooperation on the RFC-XX-M Experiment. Plasma Research. 1986;3(2).

H.R. Garner et.al. Negative Potential Mode in RFC-XX-M. Saskatoon, Canada; 1986. Conference Record of the 1986 IEEE International Conference on Plasma Science.

H.R. Garner HDP T. Sato K. Adati T. Aoki H. Fujita K Hattori S. Hidekuma T. Kawamoto R. Kumazawa S. Okamura Y. Okubo. Azimuthal Non-Uniformities Induced by ICH and ECH in the RFC-XX Mirror Plasma. Nuclear Fusion. 1986;26.

S. Okamura KA T. Aoki D.R. Baker H. Fujita H.R. Garner K. Hattori S. Hidekuma T. Kawamoto R. Kumazawa Y. Okubo T. Sato. Plasma Production with Rotating Ion Cyclotron Waves Excited by Nagoya Type-III Antennas in RFC-XX. Nuclear Fusion. 1986;26.

T. Sato RK S. Okamura K. Adati T. Aoki H. Fujita S. Hidekuma T. Kawamoto H. Masumoto K. Nishimura T. Hatori K. Takayama H.R. Garner H. D. Price A.M. Howald B. J. Leikind H. Ikezi P.B. Parks and P. Andrews. Radiofrequency Plugging and Tandem Mirror Experiments in a Cusp-Anchored Mirror Device. Plasma Physics and Controlled Nuclear Fusion Research. 1986;2:343.

1985

Garner HR. Measurement of the Ionization Profile in RFC-XX using hydrogen alpha radiation. General Atomics; 1985. General Atomics Internal Reports.

Garner HR. End of three-year contract report on the RFC-XX-M device research Nagoya, Japan March 1, 1983 thru December 31, 1985. General Atomics; 1985. General Atomics Internal Reports.

H. Price HG D. Baker P. Parks H. Ikezi T. Sato K. Adati S. Okamura R. Kumazawa T. Aoki K. Nishimura S. Hidekuma T. Kawamoto H. Fujita Y. Okubo. Operating Modes of RFC-XX-M which involve Ambipolar Potential Plugging. Bulletin of the American Physical Society. 1985;30.

H.D. Price HRG H. Ikezi. Convective radial transport in RFC-XX-M. General Atomics; 1985. General Atomics Internal Reports.

H.D. Price HRG H. Ikezi. A Laser Ablation technique to measure plasma cross-field transport velocity. General Atomics; 1985. General Atomics Internal Reports.

H.R. Garner HDP. Azimuthal Nonuniformities induced by ICH and ECH in the RFC-XX mirror plasma. General Atomics; 1985. General Atomics Internal Reports.

H.R. Garner HP S. Okamura T. Sato T. Aoki R. Kumazawa T. Adati T. Kawamoto K. Nishimura. Hot Electron Plasmas in RFC-XX-M," Bulletin of the American Physical Society. Bulletin of the American Physical Society. 1985;30.

H.R. Garner TA. Pulse discharge cleaning for open-ended systems. General Atomics; 1985. General Atomics Internal Reports.

K. Muraoka KU Y. Itsumi M. Hamamoto M. Maeda M. Akazaki T. Kawamoto R. Kumazawa S. Okamura K. Adati T. Aoki H. Fujita K. Hattori S. Hidekuma Y. Okubo T. Sato H.R. Garner D. R. Baker H. D. Price. 'Measurements of Atomic Hydrogen-Density Profiles in RFC-XX-M Machine Using Laser Fluorescense Spectroscopy at the H-alpha Transition. Jap. Journal of Appl. Phys. 1985;24.

M.A. Prelas DB T.J. Dolan J. Freeman J. Kunze S.McGhee W. Ard F. Bieniosek H. Garner. Progress on the Missouri Mirror. Bulletin of the American Physical Society. 1985;30.

R. Kumazawa KA T. Aoki H. Fujita K. Hattori S. Hidekuma T. Kawamoto K. Nishimura S. Okamura Y. Okubo T. Sato T. Hatori H.R. Garner H.D. Price. Sloshing Ion Distribution Produced by ICRF in an Axisymmetric Mirror-Cusp Device, RFC-XX-M. Budapest; 1985. Proc. 12th European COnference on Controlled Fusion and Plasma Physics, I.

1984

Aoki HRG and T. Pulse Discharge Cleaning for Open Ended Systems. Fusion Technol. (USA),. 1984;9.

D.R. Baker HRG P.B. Parks A.M. Sleeper S. Okamura K. Adati T. Aoki H. Fujita K. Hattori T. Kawamoto R. Kumazawa Y. Okubo and T. Sato. Stability studies of a hollow plasma in the double cusp experiment. Phys. Fluids. 1984;27.

Garner HR. Plasma Confinement in RFC-XX-M, An Axisymmetric Cusp End Celled Mirror Machine. Bulletin of the American Physical Society. 1984;29.

H.D. Price HI H.R. Garner. Radial transport studies in RFC-XX-M. General Atomics; 1984. General Atomics Internal Reports.

H.D. Price HI H.R. Garner. Negative potential mode operation in RFC-XX-M. General Atomics; 1984. General Atomics Internal Reports.

H.D. Price HRG H. Ikezi. Evidence of rapid radial transport in the RFC-XX-M Plasma. General Atomics; 1984. General Atomics Internal Reports.

H.D. Price HRG H. Ikezi. A Laser Ablation technique to measure cross field transport velocity. General Atomics; 1984. General Atomics Internal Reports.

H.D. Price HRG R.L. Freeman P. Parks K. Adati T. Aoki H. Fujita K. Hattori S. Hidekuma T. Kawamoto R. Kumazawa S. Okamura Y. Okubo T. Sato. Radial Transport in RFC-XX-M. Bulletin of the American Physical Society. 1984;29.

H.R. Garner DP D. Baker R. Freeman P. Parks A. Sleeper T. Sato S. Okamura K. Adati R. Kumazawa T. Aoki H. Fujita. Performance of Cusp Anchor/Plugs on the RFC-XX Tandem Mirror. Ieee; 1984. Conference Record of 1984 IEEE International COnference on Plasma Science IEEE Pub. Nol. 84CH1958-8.

H.R. Garner HDP. Mirror cusp experiment on RFC-XX technical progress report for 1 Jan 1984 thru 1 Apr 1984. General Atomics; 1984. General Atomics Internal Reports.

H.R. Garner HDP. Trip report: Nagoya Institute of Plasma Physics Japan 6 Jan thru 11 Apr 1984. General Atomics; 1984. General Atomics Internal Reports.

H.R. Garner HDP. Azimuthal Nonuniformities induced by ECH and ICH in the RFC-XX mirror plasma.; 1984.

H.R. Garner HDP H. Ikezi. Trip report: Nagoya Institute of Plasma Physics Japan 27 July to 11 Oct 1984 Nagoya Japan. General Atomics; 1984. General Atomics Internal Reports.

H.R. Garner HDP K. Matsuda R.L. Freeman P.B. Parks K. Adati T. Aoki H. Fujita K. Hattori S. Hidekuma T. Kawamoto R. Kumazawa S. Okamura Y. Okubo T. Sato. ECH Sustain Mode in RFC-XX-M. Bulletin of the American Physical Society. 1984;29.

K. Muraoka MM T. Okada C. Honda M. Hamamoto K. Uchino T. Kajiwara Y. Matsuda Y. Itsumi M. Akazaki T. Kawamoto R. Kumazawa S. Okamura H.R. Garner and RFC-XX-M Group. Developments and Applications of Laser-Fluorescence Studies of Particle-Behaviors in Plasma-Surface Interactions. Jour. Nuc. Matls.. 1984;128&129.

P.B. Parks HRG H.D. Price. RFC-XX-M axial density Profile. General Atomics; 1984. General Atomics Internal Reports.

P.B. Parks HRG H.D. Price H. Ikezi. Mirror cusp experiment on RFC-XX technical progress report for July 1 1984 thru October 31 1984. General Atomics; 1984. General Atomics Internal Reports.

P.B. Parks RLF K. Matsuda D. Price H. Garner K. Adati T. Aoki H. Fujita K. Hattori S. Hidekuma T. Kawamoto R. Kumazawa S. Okamura Y. Okubo T. Sato. Radial Transport in RFC-XX-M Induced By Nonazimuthal Heating. Bulletin of the American Physical Society. 1984;29.

S. Okamura RK K. Adati T. Aoki H. Fujita K.Hattori S. Hidekuma T. Kawamoto Y. Okubo T. Sato T. Hattori K. Muraoka K. Uchino M. Maeda M. Hamamoto K. Sunako K. Takayama D. R. Baker H.R. Garner H.D. Price P.B. Parks A.M. Sleeper R. Itatani Y. Yasaka. Plasma Heating, Confinement and Stabilization Experiments in an Axisymmetric Mirror-Cusp Device. Plasma Physics and Controlled Nuclear Fusion Research. 1984;2:337.

T. Aoki HDP R. Kumazawa H.R. Garner K. Adati Y. Okubo T. Kawamoto K. Hattori T. Sato S. Okamura H. Fujita. Azimuthal Nonuniformities induced by ECRF and ICRF in the RFC-XX mirror Plasma. General Atomics; 1984. General Atomics Internal Reports.

1983

A.M. Sleeper DRB H.R. Garner P.B. Parks T. Sato K. Adati R. Kumazawa O. Okamura T. Aoki. Transport in RFC-XX. Bulletin of the American Physical Society. 1983;28.

A.M. Sleeper TA K. Hattori D.R. Baker S. Okamura H. Fujita T. Kawamoto H.R. Garner K. Adati S. Hidekuma P.B. Parks. Stability studies of a hollow plasma in the RFC-XX double cusp. General Atomics; 1983. General Atomics Internal Reports:.

D.R. Baker HDP H.R. Garner. Plasma confinement parameters on RFC-XX. General Atomics; 1983. General Atomics Internal Reports.

D.R. Baker HRG. Trip report: Nagoya Institute of plasma Physics Japan 1 Mar thru 12 July 1983. General Atomics; 1983. General Atomics Internal Reports.

D.R. Baker HRG P.B. Parks A.M. Sleeper T. Sato K. Adati R. Kumazawa S. Okamura T. Aoki. Stability Studies of a Hollow Cusp Plasma in RFC-XX. Bulletin of the American Physical Society. 1983;28.

Garner HR. Trip report: University of Wisconsin -Madison, Phaedrus Tandem Mirror. General Atomics; 1983. General Atomics Internal Reports.

H.R. Garner DRB P.B. Parks H.D. Price A.M. Sleeper T. Sato. K. Adati R. Kumazawa S. Okamura T. Aoki H. Fujita. Initial Tandem Experiments in RFC-XX. Bulletin of the American Physical Society. 1983;28.

J.D. Callen RND C.M. Fortgang H.R. Garner A.G. Kellman D.W. Kerst M.W. Phillips S.C. Prager J.C. Sprott E.J. Strait J.C. Twichell M.C. Zarnstorff. High-Beta Neoclassical Current and Stability Experiments. Plasma Physics and Controlled Nuclear Fusion Research. 1983;2:143.

Sleeper DB S. Garner P. Parks. Stability of a Magnetic Cusp. San Diego, CA; 1983. Conference Record of the 1983 IEEE International Conference on Plasma Science.

T. Sato SO K. Adati T. Aoki D. R. Baker H. Fujita H.R. Garner K. Hattori S. Hidekuma T. Kawamoto R. Kumazawa Y. Okubo and K. Uchino. Buildup and Sustainment of 1013 cm-3 Plasma by ICRF in RFC-XX. Rancho Sante Fe: Oak Ridge National Laboratory; 1983. Proc. US-Japan Workshop on Advanced Bumpy Torus Concepts, Rancho Sante Fe Conf-830758.

1982

A.M. Sleeper HRG P.B. Parks. Stabilizing a Cusp with an Electron Ring. Bulletin of the American Physical Society. 1982;27.

H.R. Garner AMS D.R. Baker. Stabilized Cusp End Cells on RFC-XX in Nagoya Japan. Bulletin of the American Physical Society. 1982;27.

H.R. Garner DRB. Trip report: Nagoya Institute of plasma Physics Japan 27 Aug thru 21 Oct 1982. General Atomics; 1982. General Atomics Internal Reports.

P.B. Parks HRG A.M. Sleeper. Conditions for stabilizing a cusp with a hot electron ring. General Atomics; 1982. General Atomics Internal Reports.

1981

A.B. Ehrhardt HRG G.A. Navratil and R.S. Post. Cross-field diffusion and fluctuation spectra in the levitated octupole in the presence of a toroidal field. Phys. Fluids. 1981;24.

A.Y. Wong RWS J. Ferron G. Dimonte M. Fukao M.Q. Tran K. Yatsu J.R. Conrad H. Garner J.A. Halle A. Kellman D. Kerst M.W. Phillips R.S. Post S.C. Prager E.A. Rose J.C. Sprott E.J. Strait R.J. Torti M. Zarnstorff. High-Beta Confinement Experiments in Multipole/Surmac. Plasma Physics and Controlled Nuclear Fusion Research. 1981;2:709.

H.R. Garner RSP. A Study of Fluctuation Induced Transport with Microwave Scattering in the Wisconsin Levitated Octupole. Bulletin of the American Physical Society. 1981;26.

1980

Garner HR. Wisconsin Octupole Heat Transport. Bulletin of the American Physical Society. 1980;25.

1979

Garner HR. Fluctuation Studies with Microwave Scattering in the Wisconsin Levitated Octupole. Bulletin of the American Physical Society. 1979;24.

1978

J. Twichell SG J. Halle R.S. Post S.C. Prager. Ohmic Heating in the Levitated Octopole. Bulletin of the American Physical Society. 1978;23.

S. Garner GAN R.S. Post. B-Independent, l/n Diffusion in the Absolute Min-B Region of the Levitated Octupole. Bulletin of the American Physical Society. 1978;23.

S.C. Prager JT H. Garner J. Halle H. Matsumoto R.S. Post. High Beta Experiment in the Levitated Octupole. Bulletin of the American Physical Society. 1978;23.

(not specified)

Cheng Hui Lee HRG and AP. SEE-Scape: A pairwise comparison and visualization system for BLAST results.;.

D. Bhattacharya JLM D. Clark S. Guide and H. Garner. Computation and display of literature-based similarity networks.;.

D.A. Collier BP I. Craig H.R. Garner and G. Breen. The Importance of Tandem Repeats: the International Tandem Repeat Consortium.;.

D.R. Baker HDP H.R. Garner. Trip report: Nagoya Institute of Plasma Physics Japan 17 Aug thru 16 Oct 1983. General Atomics;. General Atomics Internal Reports.

Errami M TAT Galindo CL Burkart M Garner HR. Carbamazepine Alone and Especially in Combination with Doxycycline Attenuates Isoproterenol-Induced Cardiac Hypertrophy. Heart International.

G. A. Miller YB T.H. Murphy H.R. Garner. Mismatch Discrimination Characteristics of Electronically Controlled Chips.;.

Garner MH and HR. The use of SNP information to infer the mutability of human genes.;.

H.R. Garner BA and DK. Dr. Prepper – An Automated DNA Extraction and Purification System. Scientific Computing & Automation;9:61–68.

Ildiko Bock-Marquette JET Santwana Shrivastava Allissa Blystone G. C. Teg Pipes John M. Shelton Cristi L. Galindo Lyle J. Burdine David Rosenbaum Harold R. Garner Eric N. Olson Deepak Srivastava & J. Michael DiMaio. Thymosin β4 promotes coronary revascularization by developmental activation of the adult epicardium.;.

J.S. deGrassie HRG D.R. Baker. Plasma surface neutralization of helium and hydrogen plasmas. General Atomics;. General Atomics Internal Reports.

M. Ryan Weil HG & Kevin Rosenblatt. A method of mass spectrometry spectral analysis to minimize overtraining in the predictive models.;.

M. Ryan Weil MB David S. Shames John D. Minna and Harold Garner. 5-Aza-2'-deoxyCytidine induced chromatin modulation shows differential regulation at the sub-gene level.;.

Mounir Errami ATT Cristi Galindo Mark Burkart Harold R. Carbamazepine Alone and Especially in Combination with Doxycycline Attenuates Isoproterenol induced Cardiac Hypertrophy.;.

Mounir Errami WF and HRG. Bibus/eTBlast: a powerful combination for improved automated reference management.;.

Niclas C. Tan PG Wayne Fisher Michael K. Racke Amy E. Lovett-Racke Harold Garner Kevin P. Rosenblatt and Thomas Kodadek. Proteomics Biomarker Discovery in Multiple Sclerosis: Complement C3 as a Cerebrospinal Fluid Marker for Disease Progression.;.

Ohkawa HRG and T. High Frequency Acoustic Interaction of Resonant Systems Using SAWs. IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control;40.

Tomoki Yoshikawa TEH Naoko Iwata Cristi L. Galindo Harold R. Garner Clarence J. Peters and Chien-Te K Tseng. Dynamic Innate Immune Responses of Human Bronchial Epithelial Cells to Severe Acute Respiratory Syndrome-Associated Coronavirus Infection.;.

Wayne G. Fisher PPG Peter Bryant-Greenwood3 Kevin P. Rosenblatt Harold R. Garner. A Comparison of Low- and High-Performance Mass Spectrometers for Biomarker Analysis.;.