© 2000 - 2012 Virginia Bioinformatics Institute
Wednesday, 16 May 2012
Hoeschele, Ina , Ph.D.
Faculty - Publications - Hoeschele, Ina

Professor, Virginia Bioinformatics Institute
Professor, Department of Statistics, Virginia Tech
Adjunct Professor, Department of Cancer Biology, Biostatistics Core
Member, Comprehensive Cancer Center, Wake Forest University School of Medicine, Winston-Salem, NC
Adjunct Professor, Virginia Tech Carilion School of Medicine

Phone: (540) 231-3135
Email:inah@vbi.vt.edu
Fax: 540-231-2606

Administrative Specialist: Kimberly Clifton
Phone: (540) 231-9882
Email: kimvt05@vbi.vt.edu
Fax:540-231-2606

Personal_Page | Hoeschele Research Group | SysGenSIM



Publications:

2011


Galindo CL, McIver LJ, Tae H, et al. Sporadic breast cancer patients' germline DNA exhibit an AT-rich microsatellite signature. Genes Chromosomes Cancer. 2011;50(4):275–283.  http://www.ncbi.nlm.nih.gov/pubmed/21319262

Pinna A, Soranzo N, Hoeschele I, de la Fuente A. Simulating systems genetics data with SysGenSIM. Bioinformatics. 2011;27(17):2459–2462.  http://www.ncbi.nlm.nih.gov/pubmed/21737438

2010


Kangas-Kontio T, Kakko S, Tamminen M, et al. Genome scan for loci regulating HDL cholesterol levels in Finnish extended pedigrees with early coronary heart disease. Eur J Hum Genet. 2010;18(5):604–613.  http://www.ncbi.nlm.nih.gov/pubmed/19935834

Tucker DM, Maroof MAS, Mideros S, et al. Mapping Quantitative Trait Loci for Partial Resistance to Phytophthora sojae in a Soybean Interspecific Cross. Crop Science. 2010;50(2):628–635.  http://apps.webofknowledge.com/InboundService.do?SID=4DBA9IDeBGglAJoG1Ck&product=WOS&UT=000275564500022&SrcApp=EndNote&DestFail=http%3A%2F%2Faccess.isiproducts.com%2Fcustom_images%2Fwok5_failed_auth.html&Init=Yes&action=retrieve&SrcAuth=ResearchSoft&custo

Zou F, Huang H, Lee S, Hoeschele I. Nonparametric Bayesian variable selection with applications to multiple quantitative trait loci mapping with epistasis and gene-environment interaction. Genetics. 2010;186(1):385–394.  http://www.ncbi.nlm.nih.gov/pubmed/20551445

2009


Armenta JM, Hoeschele I, Lazar IM. Differential Protein Expression Analysis Using Stable Isotope Labeling and PQD Linear Ion Trap MS Technology. Journal of the American Society for Mass Spectrometry. 2009;20:1287–1302.  http://www.sciencedirect.com/science/article/B6TH2-4VRX67H-1/2/800f165f177f6644b326280578b98802

Gao G, Allison DB, Hoeschele I. Haplotyping Methods for Pedigrees. Human Heredity. 2009;67:248–266.  http://www.karger.com/DOI/10.1159/000194978

Hanwen Huang, Haibo Zhou, Fuxia Cheng, Ina Hoeschele, Fei Zou. Gaussian Process Based Bayesian Semiparametric Quantitative Trait Loci Interval Mapping. Biometrics. 2009;9999.  http://dx.doi.org/10.1111%2Fj.1541-0420.2009.01268.x

Liu B, Hoeschele I, de la Fuente A. Inferring gene regulatory networks from genetical genomics data. In: Das S, Caragea D, Hsu WH, Welsh SM, eds. Computational methodologies in gene regulatory networks. IGI Global; 2009:In press.  

Zhou L, Mideros S, Bao L, et al. Infection and genotype remodel the entire soybean transcriptome. BMC Genomics. 2009;10:49.  http://www.biomedcentral.com/1471-2164/10/49

2008


Bao L, Hoeschele I. Quality Assessment for Short Oligonucleotide Microarray Data. Comment. Technometrics. 2008;50:268–270.  

Gao G, Hoeschele I. A rapid conditional enumeration haplotyping method in pedigrees. Genet Sel Evol. 2008;40:25–36.  http://www.hubmed.org/display.cgi?uids=18096113

Hoeschele I. Mapping Quantitative Trait Loci in Outbred Pedigrees. In: Handbook of Statistical Genetics. John Wiley & Sons, Ltd; 2008:623–677.  http://dx.doi.org/10.1002%2F9780470061619.ch19

Liu B, de la Fuente A, Hoeschele I. Gene network inference via structural equation modeling in genetical genomics experiments. Genetics. 2008;178:1763–1776.  http://www.hubmed.org/display.cgi?uids=18245846

Tyler BM, Jiang RHY, Zhou L, et al. Functional Genomics and Bioinformatics of the Phytophthora sojae Soybean Interaction. In: Genomics of Disease.; 2008:67–78.  http://dx.doi.org/10.1007%2F978-0-387-76723-9_6

2007


Hoeschele I. Mapping quantitative trait loci in outbred populations. In: Balding DJ, Bishop M, Cannings C, eds. Handbook of statistical genetics. New York: Wiley; 2007:623–677.  

Stock KF, Distl O, Hoeschele I. Influence of priors in Bayesian estimation of genetic parameters for multivariate threshold models using Gibbs sampling. Genetics Selection Evolution. 2007;39:123–137.  

Stock KF, Distl O, Hoeschele I. Bayesian estimation of genetic parameters for multivariate threshold and continuous phenotypes and molecular genetic data in simulated horse populations using Gibbs sampling. BMC Genet. 2007;8:19.  http://www.hubmed.org/display.cgi?uids=17490471

Stock KF, Hoeschele I, Distl O. Estimation of genetic parameters and prediction of breeding values for multivariate threshold and continuous data in a simulated horse population using Gibbs sampling and residual maximum likelihood. Journal of Animal Breeding and Genetics. 2007;124:308–319.  http://www.blackwell-synergy.com/doi/abs/10.1111/j.1439-0388.2007.00666.x

2006


Betthauser JM, Pfister-Genskow M, Xu HZ, et al. Nucleoplasmin facilitates reprogramming and in vivo development of bovine nuclear transfer embryos. Molecular Reproduction and Development. 2006;73:977–986.  

2005


Bing N, Hoeschele I. Genetical Genomics Analysis of a Yeast Segregant Population for Transcription Network Inference. Genetics. 2005:genetics.105.041103.  http://www.genetics.org/cgi/content/abstract/genetics.105.041103v2

Bing N, Hoeschele I, Ye KY, Eilertsen KJ. Finite mixture model analysis of microarray expression data on samples of uncertain biological type with application to reproductive efficiency. Veterinary Immunology and Immunopathology. 2005;105:187–196.  

Gao G, Hoeschele I. A note on a conditional enumeration haplotyping method in pedigrees. New York: Springer-Verlag; 2005. Lecture Notes in Bioinformatics.  

Gao GM, Hoeschele I. Approximating identity-by-descent matrices using multiple haplotype configurations on pedigrees. Genetics. 2005;171:365–376.  

Hoeschele I, Li H. A note on joint versus gene-specific mixed model analysis of microarray gene expression data. Biostatistics. 2005;6:183–186.  

Pfister-Genskow M, Myers C, Childs LA, et al. Identification of differentially expressed genes in individual bovine preimplantation embryos produced by nuclear transfer: Improper reprogramming of genes required for development. Biology of Reproduction. 2005;72:546–555.  

2004


de la Fuente A, Bing N, Hoeschele I, Mendes P. Discovery of meaningful associations in genomic data using partial correlation coefficients. Bioinformatics. 2004;20:3565–3574.  

Gao GM, Hoeschele I, Sorensen P, Du FX. Conditional probability methods for haplotyping in pedigrees. Genetics. 2004;167:2055–2065.  

2003


Freyer G, Sorensen P, Kuhn C, Weikard R, Hoeschele I. Search for pleiotropic QTL on chromosome BTA6 affecting yield traits of milk production. Journal of Dairy Science. 2003;86:999–1008.  

Kakko S, Kelloniemi J, von Rohr P, et al. ATP-binding cassette transporter A1 locus is not a major determinant of HDL-C levels in a population at high risk for coronary heart disease. Atherosclerosis. 2003;166:285–290.  

2002


Du F-X, Sorensen P, Thaller G, Hoeschele I. Joint linkage disequilibrium and linkage mapping of quantitative trait loci. Proceedings of the 7th World Congress of Genetics Applied to Livestock Production. 2002;32:661–668.  

Freyer G, Kuhn C, Weikard R, Zhang Q, Mayer M, Hoeschele I. Multiple QTL on chromosome six in dairy cattle affecting yield and content traits. Journal of Animal Breeding and Genetics. 2002;119:69–82.  

Stricker C, Schelling M, Du F-X, Hoeschele I, Fern. A comparison of efficient genotype samplers for complex pedigrees and multiple linked loci.; 2002:637–644. Proceedings of the 7th World Congress on Genetics Applied to Livestock Production 32.  

von Rohr P, Hoeschele I. Bayesian QTL mapping using skewed Student-t distributions. Genetics Selection Evolution. 2002;34:1–21.