© 2000 - 2012 Virginia Bioinformatics Institute
Wednesday, 16 May 2012
Bisset, Keith , PhD
Faculty - Publications - Bisset, Keith

Simulation and Systems Software Development Scientist

Phone: (540) 231-3849
Email:kbisset@vt.edu
Fax: (540) 231-2891

Administrative Specialist: Leslie Dawson
Phone: (540) 231-8252
Email: adawson1@vbi.vt.edu

Personal_Page | Network Dynamics and Simulation Science Laboratory | Network Dynamics and Simulation Science Lab



Publications:

2012


Leidig J, Bisset K, Hall K, Mortveit H, Shams Z, Wendelsdorf K. A Job Submission System Architecture to Support the Public Health Modeling and Simulation Community.; 2012. ACM SIGHIT International Health Informatics Symposium (IHI).  

2011


Barrett C, Bisset K, Leidig J, Marathe A, Marathe M. Economic and social impact of influenza mitigation strategies by demographic class. Epidemics Journal. 2011;3:19–31.  http://www.elsevier.com/wps/find/journaldescription.cws_home/714736/description#description

Bisset K, Aji A, Marathe M, Feng W. High-Performance biocomputing for simulating the spread of contagion over large contact networks.. 2011.  

Bisset K, Ashwin A, Marathe M, Feng W-C. High performance biocomputing for simulating the spread of contagion over large contact networks. Orlando, Florida, February 3-5, 2011; 2011. Proceedings of 1st IEEE International Conference on Computational Advances in Bio and Medical Scienc.  

Bisset K, Chen J, Kuhlman C, Kumar VSA, Marathe M. Interaction-based HPC modeling of social, biological and economic contagions over large networks.; 2011. Winter Simulation Conference.  

Channakeshava K, Bisset K, Marathe M, Vullikanti A, Yardi S. High performance scalable and expressive modeling environment to study mobile malware in large dynamic networks. Anchorage, Alaska, May 16-20, 2011; 2011. Proceedings of 25th IEEE International Parallel & Distributed Processing Symposium.  

Ma Y, Bisset K, Chen J, Deodhar S, Marathe M. Formal Specification and Experimental Analysis of an Interactive Epidemic Simulation Framework. Banf, CANADA; 2011. ESCAPE: Extreme Scale Computing APplication Enablement – Modeling and Tools.  http://www.cs.nthu.edu.tw/~cherung/workshop/escape/

Ma Y, Bisset K, Chen J, deodhar S, Marathe M. Efficient Implementation Of Complex Interventions In Large Scale Epidemic Simulations.; 2011. Winter Simulation Conference.  

wendelsdorf K, Bassaganya-Riera J, Bisset K, eubank S, hontecillas-Magarzo R, marathe M. ENteric Immunity SImulator: A tool for in silico study of gut immunopathologies. San Francisco, CA; 2011. Aai.  

2010


Aji A, Feng W-C, Bisset K. Modeling kernel offload methodologies in multi-GPU environment: A case study. Anchorage, Alaska, May 16-20, 2011; 2010. Proceedings of 25th IEEE International Parallel & Distributed Processing Symposium.  

Barrett C, Bisset K, Leidig J, Marathe A, Marathe M. An integrated modeling environment to study the coevolution of networks, individual behavior and epidemics. AI Magazine. 2010;31:75–87.  

Bisset K, Chen J, Feng A, Ma Y, Marathe M. INDEMICS : Interactive Epidemic Simulation Framework for Complex Public Health Strategy Studies.; 2010. International Conference on Supercomputing.  

Bisset K, Chen J, Feng X, Ma Y, Marathe M. Indemics: an interactive data intensive framework for high performance epidemic simulation. Tsukuba, Japan, June 1-4, 2010; 2010. Proceedings of 24th International Conference on Supercomputing.  http://portal.acm.org/citation.cfm?id=1810085.1810118

Channakeshava K, Bisset K, Kumar A, Marathe M, Yardi S. Fast-EpiNet: An efficient and scalable framework for simulating wireless epidemics on multi-core clusters. San Diego, CA, September 13-16; 2010. 39th International Conference on Parallel Processing.  

Eubank S, Barrett C, Beckman R, et al. Detail in Network Models of Epidemiology: are we there yet? Journal of Biological Dynamics. 2010;4:446–455.  http://www.informaworld.com/smpp/content~content=a921954532

2009


Barrett C, Bisset K, Leidig J, Marathe A, Marathe M. Estimating the economic impact of public strategies for controlling an epidemic: a multi-agent approach. Pasadena, California; 2009:34–39. Proceedings of 21st Innovative Applications of Artificial Intelligence Conference.  www.aaai.org/ocs/index.php/IAAI/IAAI09/paper/download/248/1015

Bisset K, Barrett C, Leidig J, Marathe A, Marathe M. Estimating the impact of public and private strategies for controlling and Epidemic: A multi-agent approach. Pasadena, California; 2009:34–39. Proceedings of the Twenty-First Innovative Applications of Artificial Intelligence Conference.  http://www.aaai.org/ocs/index.php/IAAI/IAAI09/paper/viewFile/248/1015

Bisset K, Chen J, Feng X, Kumar VSA, Marathe M. EpiFast: A fast algorithm for large scale realistic epidemic simulations on distributed memory systems. Yorktown Heights, New York; 2009:430–439. Proceedings of 23rd ACM International Conference on Supercomputing (ICS'09).  http://influenza.vbi.vt.edu/pdfs/publications/barrett-2009-acm-23ics09.pdf

Bisset K, Feng X, Yardi S, Marathe M. Modeling interaction between individuals, social networks, and public policy to support public health epidemiology. In: Rossetti MD, Hill RR, Johansson B, Dunkin A, Ingalls RG, eds. Austin, Texas; 2009:2020–2031. Proceedings of the 2009 Winter Simulation Conference.  http://www.informs-sim.org/wsc09papers/194.pdf

Channakeshava K, Chafekar D, Bisset K, Kumar VSA, Marathe M. EpiNet: A simulation framework to study the spread of malware in wireless networks. Rome, Italy, March 2-6, 2009; 2009. Proceeding of 2nd International Conference on Simulation Tools and Techniques (SIMUTools '09).  http://portal.acm.org/citation.cfm?id=1537622

2008


Atkins K, Barrett C, Beckman R, et al. An interaction based composable architecture for building scalable models of large social, biological, information and technical systems. CT Watch. 2008;4:46–53.  http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2800380/

Barrett C, Bisset K, Eubank S, Feng X, Marathe M. EpiSimdemics: an efficient and scalable framework for simulating the spread of infectious disease on large social networks. Austin, Texas, November 15-21.; 2008. Proceedings of SuperComputing 08 International Conference for High Performance Computing, Networking.  http://portal.acm.org/citation.cfm?id=1413370.1413408

Barrett C, Bisset K, Konjevod G, Marathe M, Wagner D. Engineering label-constrained shortest-path algorithms. LNCS. Springer; 2008:27–37. Proceedings of the Fourth International Conference on Algorithmic Aspects in Information and Managem.  

Barrett CL, Beckman R, Bisset K, et al. Investigating the role of public policies and individual behavior on epidemics: a multi-agent systems approach. Chicago, Illinois; 2008. Proceedings of Association for the Advancement of Artificial Intelligence.  

2007


Barrett C, Bisset K, Chen J, et al. Effect of public policies and individual behavior on the co-evolution of social networks and infectious disease dynamics. Rutgers University; 2007. Paper Presented at DIMACS Workshop on Computational Methods for Dynamic Interaction Networks.  

Barrett C, Bisset K, Eubank S, et al. A scalable data management tool to support epidemiological modeling of large urban regions. In: Research and Advanced Technology for Digital Libraries. Vol. 4675. Springer Berlin/Heidelberg; 2007:546–548.  http://www.springerlink.com/content/g38x1801770177g7/

Barrett C, Bisset K, Eubank S, Kumar VSA, Marathe M, Mortveit H. Modeling and simulation of large biological, information and socio-technical systems: An interaction-based approach. In: Proceedings of the Short Course on Modeling and Simulation of Biological Networks, AMS Lecture Notes, Series: PSAPM. Vol. 64.; 2007:101–147.  

Roberts D, Simoni DA, Marathe M, et al. Teragrid enabled national scale epidemiological models for MIDAS.; 2007. Proceedings of Tera.  

2006


Bisset K, Lewis B, Kumar K, Mortveit H. Will pandemic flu get you ? Using math, supercomputers, and computer science to solve pressing public health problems.; 2006.  

2002


Barrett C, Bisset K, Jacob R, Konjevod G, Marathe M. An experimental analysis of a routing algorithm for realistic transportation networks. Rome, Italy; 2002. Proceedings of European Symposium on Algorithms (ESA).  

Mohring R, Barrett C, Bisset K, Jacob R, Konjevod G, Marathe M. Classical and Contemporary Shortest Path Problems in Road Networks: Implementation and Experimental Analysis of the TRANSIMS Router. In: Algorithms ESE. Springer Berlin / Heidelberg: Springer; 2002:313–319. Lecture Notes in Computer Science 2461.  http://www.springerlink.com/content/80bahx1f2gkf5a63/

1998


Bisset K. An adaptive synchronization protocol for parallel discrete even simulation. Boston, MA; 1998. Proceedngs of 31st Annual Simulation Symposium.  http://ndssl.vbi.vt.edu/Publications/AdaptiveSyncProtocol_Keith.pdf

1994


Mead W, Fischer H, Jones R, Bisset K, Lee L. Application of adaptive and neural network computational techniques to traffic volume and classification monitoring. Transportation Research Record. 1994;1466:116–123.