© 2000 - 2012 Virginia Bioinformatics Institute
Wednesday, 16 May 2012
Eubank, Stephen , Ph.D.
Faculty - Publications - Eubank, Stephen

Professor, Virginia Bioinformatics Institute
Deputy Director, Network Dynamics and Simulation Science Laboratory
Adjunct Professor, Department of Physics

Phone: (540) 231-2504
Email:seubank@vbi.vt.edu
Fax: 540-231-2891

Personal_Page | Network Dynamics and Simulation Science Laboratory | NDSSL Research Group



Publications:

2011


Barrett C, Channakeshava K, Eubank S, Kumar VSA, Marathe M. From biological and social network metaphors to coupled bio-social wireless networks. International Journal of Autonomous Adaptive Communications. 2011;4:122–144.  

Lee B, McGlone S, Wong K, et al. Modeling the spread of methicillin-resistant staphylococcus aureus (MRSA) outbreaks throughout the hospitals in Orange County, California. Infection Control and Hospital Epidemiology. 2011;32:562–572.  

Lee B, Song Y, McGlone S, et al. Social network analysis of paitent sharing among hospitals in Orange County, California. American Journal of Public Health. 2011;101:707–713.  

Lewis B, Kleinman K, Abrams A, Eubank S. in silico surveillance: evaluating outbreak detection with agent-based simulations.. 2011.  

Marathe A, Lewis B, Chen J, Eubank S. Sensitivity of Household Transmission to Household Contact Structure and Size. PLOS One. 2011.  www.plosone.org

wendelsdorf K, Bassaganya-Riera J, Bisset K, eubank S, hontecillas-Magarzo R, marathe M. ENteric Immunity SImulator: A tool for in silico study of gut immunopathologies. San Francisco, CA; 2011. Aai.  

2010


Barrett C, Eubank S, Marathe A, Marathe M, Pan Z, Swarup S. Information integration to support policy informatics. The Innovation Journal: The Public Sector Innovation Journal. 2010;16:Article 2.  http://www.innovation.cc/volumes-issues/vol16-no1.htm

Eubank S, Barrett C, Beckman R, et al. Detail in Network Models of Epidemiology: are we there yet? Journal of Biological Dynamics. 2010;4:446–455.  http://www.informaworld.com/smpp/content~content=a921954532

Eubank S, Kumar VSA, Khan M, Marathe M, Barrett C. Beyond Degree Distributions: Local to Global Structure of Social Contact Graphs. In: Advances in Social Computing, Third International Conference on Social Computing, Behavioral Modeling, and Prediction (SBP). Vol. 6007. Springer Berlin / Heidelberg; 2010:1.  http://www.springerlink.com/content/98592811k4k95680/

Goldstein E, Apolloni A, Lewis B, et al. Distribution of vaccine/antivirals and the “Least Spread Line” in a stratified population. Journal of the Royal Society Interface. 2010;7:755–764.  http://rsif.royalsocietypublishing.org/content/early/2009/10/09/rsif.2009.0393

Huang S, Avery T, Song Y, et al. Quantifying inter-hospital patient sharing as a mechanism for infectious disease spread. Infection Control and Hospital Epidemiology. 2010;31:1160–1169.  

Kuhlman C, Lewis B, Beckman R, Eubank S, Dutta T. Clustering method incorporating network topology and dynamics. Orlando, Florida, April 12-14, 2010; 2010. Proceedings of Society for Modeling & Simulation International.  

Wendelsdorf K, Bassaganya-Riera J, Hontecillas R, Eubank S. Model of colonic inflammation: Immune modulatory mechanisms in inflammatory bowel disease. Journal of Theoretical Biology. 2010;264:1225–1239.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=20362587

2009


Barrett C, DuBois T, Eubank S, Kumar AVS, Marathe M, Srinivasan A. Sequestering critical workers in event of epidemics. Austin, TX; 2009. ACM-SIAM Symposium on Discrete Algorithms (SODA10).  

Barrett C, Eubank S, Marathe M. Policy informatics for co-evolving socio-technical networks. Linkoping, Sweden; 2009. Proceedings of 4th International Conference on Critical Infrastructures.  

Barrett C, Lewis B, Chen J, et al. Interactions among human behavior, social networks, and societal infrastructures: A case study in computational epidemiology. In: Ravi S, Shukla S, eds. Fundamental Problems in Computing: Essays in Honor of Professor Daniel J. Rosenkrantz. Vol. Xxii. Springer Verlag; 2009:479–507.  http://www.springer.com/computer/swe/book/978-1-4020-9687-7

Feighner BH, Eubank S, Glass RJ, Davey VJ, Chretien J-P, JC G. Infectious disease modeling and military readiness [conference summary}. Emerging Infectious Diseases. 2009;15.  

2008


Adasi K, Barrett CL, Eubank S, et al. A Review of malaria modeling.. 2008.  

Atkins K, Barrett C, Beckman R, et al. An interaction based composable architecture for building scalable models of large social, biological, information and technical systems. CT Watch. 2008;4:46–53.  http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2800380/

Barrett C, Bisset K, Eubank S, Feng X, Marathe M. EpiSimdemics: an efficient and scalable framework for simulating the spread of infectious disease on large social networks. Austin, Texas, November 15-21.; 2008. Proceedings of SuperComputing 08 International Conference for High Performance Computing, Networking.  http://portal.acm.org/citation.cfm?id=1413370.1413408

Barrett C, Eubank S, Lewis B, Marathe M. Pandemics, Detection and Management. In: Xiong X, ed. Encyclopedia of Geographic Information Systems. Springer US; 2008:839–843.  http://www.springerlink.com/content/q7577h543x53k004/

Barrett C, Eubank S, Marathe M. An interaction-based approach to computational epidemiology. Chicago, IL: AAAI Press; 2008:1590–1593. Proceedings of 23rd Association for the Advancement of Artificial Intelligence 3.  http://www.aaai.org/Papers/AAAI/2008/AAAI08-269.pdf

Barrett CL, Beckman R, Bisset K, et al. Investigating the role of public policies and individual behavior on epidemics: a multi-agent systems approach. Chicago, Illinois; 2008. Proceedings of Association for the Advancement of Artificial Intelligence.  

Eubank S. Simulating antiviral distribution. Washington, DC; 2008. Invited presentation to DHHS Conference entitled "Public Discussions of Home stockpiling for Influen.  file://localhost/Volumes/SIMSCI/Endnotes/Presentations/HHS_eubank.ppt

Eubank S, Kumar VSA, Marathe M. Epidemiology and wireless communication: Tight Analogy or Loose Metaphor. In: Bio-Inspired Computing and Communication. Vol. 5151. Springer Verlag; 2008:91–104.  http://www.springerlink.com/content/h756844635r84763/

Halloran ME, Ferguson NM, Eubank S, et al. Modeling targeted layered containment of an influenza pandemic in the United States. Proceedings of the National Academy of Sciences (PNAS). 2008;105:4639–4644.  http://www.pnas.org/content/105/12/4639.abstract

Yang Y, Koopman JS, Samore MH, Eubank S, Lewis B. Model analysis of potential causes for pertussis secular trends. Asilomar, California; 2008. Epidemics Journal and Conference on Infectious Diseases Dynamics.  

2007


Barrett C, Bisset K, Chen J, et al. Effect of public policies and individual behavior on the co-evolution of social networks and infectious disease dynamics. Rutgers University; 2007. Paper Presented at DIMACS Workshop on Computational Methods for Dynamic Interaction Networks.  

Barrett C, Bisset K, Eubank S, et al. A scalable data management tool to support epidemiological modeling of large urban regions. In: Research and Advanced Technology for Digital Libraries. Vol. 4675. Springer Berlin/Heidelberg; 2007:546–548.  http://www.springerlink.com/content/g38x1801770177g7/

Barrett C, Bisset K, Eubank S, Kumar VSA, Marathe M, Mortveit H. Modeling and simulation of large biological, information and socio-technical systems: An interaction-based approach. In: Proceedings of the Short Course on Modeling and Simulation of Biological Networks, AMS Lecture Notes, Series: PSAPM. Vol. 64.; 2007:101–147.  

Barrett C, Eubank S, Lewis B, Marathe M. Information systems for detection and management of pandemics. In: Shekar S, Xiong H, eds. Encyclopedia of Geographic Information Systems. Springer Verlag; 2007.  

Del Valle S, Hyman J, Hethcote H, Eubank S. Mixing patterns between age groups in social networks. Social Networks. 2007;29:539–554.  http://www.sciencedirect.com/science/article/B6VD1-4NNN0GJ-1/2/e3dc5a87596fced29d9eb9803d2f111a

Roberts D, Simoni DA, Marathe M, et al. Teragrid enabled national scale epidemiological models for MIDAS.; 2007. Proceedings of Tera.  

2006


Barrett C, Eubank S, Marathe M. Modeling and simulation of large biological, information and socio-technical systems: An interaction based approach. In: D G, Smoka SA, Wegner P, eds. Interactive Computing: A new Paradigm. Springer Berlin Heidelberg; 2006:353–394.  

Barrett C, Eubank S, Marathe M, Mortveit H. An interaction-based computing approach to modeling and simulation of large biological and socio-technical systems. In: AMS Lecture Notes.; 2006.  

Barrett CL, Eubank S, Marathe MV. An Interaction Based Approach to Modeling and Simulation of Large Biological, Information and Socio-Technical Systems. In: Interactive Computation: The New Paradigm. Springer; 2006:353–392.  

Eubank S. Cyberinfrastructure for epidemiological simulations.; 2006. Invited Presentation to NCSA Infectious Disease Informatics at the University of Illinois at Urbana-.  

Eubank S. Validating model assumptions. Washington, DC; 2006. Institute of Medicine Workshop on the Role of Community-Based Mitigation Strategies.  

Eubank S, Kumar VSA, Marathe M, Srinivasan A, Wang N. Structure of social contact networks and their impact on epidemics. In: In AMS-DIMACS Special Volume on Epidemiology. Vol. 70.; 2006:181–213.  http://gladiator.ncsa.illinois.edu/PDFs/networks/eubank2006.pdf

2005


Barrett C, Eubank S, Marathe M. Modeling and Simulation of Large Biological, Information and Socio-Technical Systems: An Interaction Based Approach. In: Goldin D, Smoka SA, Wegner P, eds. Interactive Computing: A new Paradigm. Springer Berlin Heidelberg; 2005:353–394.   http://isbn.nu/978-3-540-34666-1

Barrett C, Eubank S, Smith J. If Smallpox Strikes Portland.. Scientific American. 2005;292:54–61.  http://www.idready.org/webcast/spr05_cider/2005-03-15/EpiSims-March2005.pdf

Eubank S. Network based models of infectious disease spread. Japanese Journal of Infectious Diseases. 2005;58:S9–S13.  

Toroczkai Z, Eubank S. Agent-based modeling as a decision making tool: how to halt a smallpox epidemic. Niskayuna, New York; 2005:22–27. Proceedings of Eleventh Annual Symposium on Frontiers of Engineering Organized by National Academy o 35.  file://localhost/Volumes/simsci/Endnotes/NDSSL%20Database.Data/PDF/05-027-0822332160/05-027.pdf

Toroczkai Z, Eubank S. Agent-based modeling as a decision-making tool. The Bridge. 2005;35:22–27.  

2004


Barrett C, Eubank S, Kumar VSA, Marathe M. Understanding Large-Scale Social and Infrastructure Networks: A Simulation-Based Approach. SIAM News. 2004;37:1–5. Appears as part of Math Awareness Month on th.  

Eubank S. Mathematics of Epidemiological Simulations for Response Planning. In: Mathematical Science's Role In Homeland Security: Proceedings Of A Workshop. Washington, DC.: National Academies Press; 2004:166–187.  http://www.nap.edu/catalog.php?record_id=10940

Eubank S, Guclu H, Kumar VSA, et al. Modelling disease outbreaks in realistic urban social networks. Nature. 2004;429:180–184.  http://ndssl.vbi.vt.edu/Publications/modellingDisease.pdf

Eubank S, Kumar VSA, Marathe M, Srinivasan A, Wang N. Structural and algorithmic aspects of massive social networks. New Orleans, Louisiana: Society for Industrial and Applied Mathematics; 2004:718–727. Proceedings of the fifteenth annual ACM-SIAM symposium on Discrete algorithms.  http://portal.acm.org/citation.cfm?id=982792.982902

Eubank S, Kumar VSA, Marathe MV, Srinivasan A, Wang N. Structural and algorithmic aspects of massive social networks. In: Proceedings of the 15th ACM-SIAM Symposium on Discrete Algorithms (SODA). Society for Industrial and Applied Mathematics Philadelphia, PA, USA; 2004:718–727.  

2003


Chowell G, Hyman JM, Eubank S, Castillo-Chavez C. Scaling laws for the movement of people between locations in a large city. Physical Review E.. 2003;68:066102.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14754264

2002


Barrett C, Eubank S, Marathe M, Mortveit H, Reidys C. Science and engineering of large scale socio-technical simulations. In: Wie CR eds, ed. San Antonio, Texas; 2002. Proceedings of 1st International Conference on Grand Challenges in Simulations held as a part of Wes.  http://www.thesimguy.com/GC/papers/WMC02/G083_MARATHE.pdf

Eubank S. Scalable, efficient epidemiological simulation. Madrid, Spain: Acm; 2002:139–145. Proceedings of the 2002 ACM symposium on Applied computing.  http://doi.acm.org/10.1145/508791.508819

2001


Eubank S. Transportation Networks: Dynamics and Simulation. Posttsdam; 2001:139–145. Proceedings of the 6th Experimental Chaos Conference.  

2000


Barrett C, Eubank S, Marathe M, Mortveit H, Reidys C. Science and engineering of large scale socio-technical simulations. In: Vakilzadian H, Wie CR, Wie CR eds, eds. San Diego, California; 2000. Proceedings of 2000 ICSEE Western MultiConference on Computer Simulation (ICSEE/WMC'2000).  http://ndssl.vbi.vt.edu/Publications/ScienceAndEngineering_Barrett.pdf

1999


Eubank SG. What makes a simulation useful? [TRANSIMS]. Tokyo; 1999:640–644 vol.4. Proceedings of the IEEE Systems Man and Cybernetics Conference 4.  

1998


Black E, Eubank S, Kashioka H, Saia J. Reinventing Part-of-Speech Tagging.. 1998;5.  

1997


Black E, Eubank S, Kashioka H. The Non-Dictionary: Description and Evaluation of a Dictionaryless Semantic and Syntactic Tagger for Unrestricted English Text.; 1997:16–30. Proc. of the Natural Language Processing Association, Kyoto.  

Black E, Eubank S, Kashioka H. Probabilistic Parsing of Unrestricted English Text, With A Highly-Detailed Grammar. In: J. Zhou and K. Church eds, ed. Proceedings of the Fifth Workshop on Very Large Corpora,Beijing and Hong Kong.; 1997:16–30.  

1996


Black E, Eubank S, Kashioka H, Magerman D, Garside R, Leech G. Beyond skeleton parsing: producing a comprehensive large-scale general-English treebank with full grammatical analysis. Copenhagen, Denmark: Association for Computational Linguistics Morristown, NJ, USA; 1996:107–112. Proceedings of the 16th conference on Computational linguistics – Volume 1.  

Black E, Eubank S, Kashioka H, Magerman D, Ushioda A. The Non-Dictionary: Towards More Detailed And Robust Part-Of-Speech Tagging.; 1996. Proceedings of the Workshop on Very Large Corpora.  

Eubank S, Kashioka H. Merging statistical and rule-based methods using decision trees. France; 1996:182–189. Proceedings of MIDDIM-96, ed. CH. Boitet, LeCol De Porte.  

Eubank S, Kashioka H, Black E. A New Approach to Treebank Creation. Tokyo; 1996:265–268. Proc. of the Natural Language Processing Association.  

1993


Eubank S, Theiler J. Don't Bleach Chaotic Data. Chaos. 1993;3:771–782.  

1992


Casdagli M, Eubank S, Farmer JD, et al. Nonlinear modeling of chaotic time series: Theory and applications. In: Kim JH, Stringer J, eds. Applied Chaos. New York: John Wiley & Sons, Inc.; 1992:335–380.   http://isbn.nu/0471544531

Gibson JF, Farmer JD, Casdagli M, Eubank S. An analytic approach to practical state space reconstruction. Physica D.. 1992;57:1–30.  

Theiler J, Eubank S, Longtin A, Galdrikian B, Farmer JD. Testing for nonlinearity in time series: the method of surrogate data. Physica D: Nonlinear Phenomena. 1992;58:77–94.  http://www.sciencedirect.com/science/article/B6TVK-46FYTH6-1B/2/4f8a23bbdb4e3f00b44b3d3124b483f1

1991


Casdagli M, Eubank S, Farmer JD, Gibson J. State space reconstruction in the presence of noise. Physic D. 1991;51:52–98.  

1990


Eubank S, Casdagli M, Farmer JD, Gibson J. State space forecasting and noise reduction.; 1990:641–642 vol.2.  

Eubank S, Farmer JD. Introduction to Chaos and Randomness. In: Jen E, Wesley A, eds. chapter 4 in 1989 Lectures in Complex Systems, Santa Fe Institute Studies in the Sciences of Complexity, Lectures. Vol. 12. Also Appeared in Nonlinear Science ed. L. Lam, Springer-Verlag (1996); 1990:75–190.  

1989


Eubank S, Miner W, Tajima T, Wiley J. Interactive Computer Simulation and Analysis of Newtonian Dynamics. Ajp. 1989;57:457–463.  

1987


Eubank S, Chiu C. Migdal-Kadanoff Determination of the Gell-Mann-Low Function for Mixed Action SU(2) Lattice Gauge Theories. Nuc. Phys.. 1987;B285:363–389.