© 2000 - 2012 Virginia Bioinformatics Institute
Wednesday, 16 May 2012
Tripathy, Sucheta , Ph.D
Faculty - Publications - Tripathy, Sucheta

Bioinformatics Team Lead

Phone: (540) 231-8138
Email:sutripa@vbi.vt.edu
Fax: 540-231-2606

Personal_Page | Lawrence Research Group | Twitter Page



Publications:

2012


Tripathy S, Jiang RH. Massively parallel sequencing technology in pathogenic microbes. Methods Mol Biol. 2012;835:271–294.  http://www.ncbi.nlm.nih.gov/pubmed/22183660

2011


Tripathy S et al. Herbal Perspectives. Herbal Perspectives : Present and Future. 2011:461.  http://www.vedamsbooks.com/no84125.htm

Wang Q, Han C, Ferreira AO, et al. Transcriptional programming and functional interactions within the Phytophthora sojae RXLR effector repertoire. Plant Cell. 2011;23:2064–2086.  http://www.ncbi.nlm.nih.gov/pubmed/21653195

2010


Baxter L, Tripathy S, Ishaque N, et al. Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome. Science. 2010;330(6010):1549–1551.  http://dx.doi.org/10.1126%2Fscience.1195203

Levesque CA, Brouwer H, Cano L, et al. Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire. Genome Biol. 2010;11:R73.  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=20626842

Maroof S M.A, Tucker DM, Skoneczka JA, Bowman B.C, Tripathy S, Tolin SA. Fine Mapping and Candidate Gene Discovery of the Soybean Mosaic Virus Resistance Gene, Rsv4. The Plant Genome. 2010;3:9.  https://www.crops.org/publications/tpg/articles/3/1/14

Wang H, Waller L, Tripathy S, et al. Analysis of Genes Underlying Soybean Quantitative Trait Loci Conferring Partial Resistance to Phytophthora sojae. The Plant Genome. 2010;3:18.  https://www.soils.org/publications/tpg/articles/3/1/23

2009


Zhou L, Mideros SX, Bao L, et al. Infection and genotype remodel the entire soybean transcriptome. BMC Genomics. 2009;10:49.  http://www.biomedcentral.com/1471-2164/10/49

2008


Jiang RHY, Tripathy S, Govers F, Tyler BM. RXLR effector reservoir in two Phytophthora species is dominated by a single rapidly evolving superfamily with more than 700 members. Proceedings of the National Academy of Sciences of the United States of America. 2008;105:4874–4879.  http://www.ncbi.nlm.nih.gov/pubmed/18344324?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum

Tyler BM, Jiang RHY, Zhou L, et al. Functional Genomics and Bioinformatics of the Phytophthora sojae Soybean Interaction.. 2008:12.  http://www.springerlink.com/content/vl3485l8u3857952/

2007


Torto-Alalibo TA, Tripathy S, Smith BM, et al. Expressed sequence tags from phytophthora sojae reveal genes specific to development and infection. Molecular plant-microbe interactions : MPMI. 2007;20:781–793.  http://www.ncbi.nlm.nih.gov/pubmed/17601166?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum

2006


Tripathy S, Pandey V, Fang B, Salas F, Tyler BM. Database: Mold Codes. Science. 2006;311:1685a.  http://www.sciencemag.org/cgi/content/summary/sci;311/5768/1685a?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&fulltext=mold&searchid=1&FIRSTINDEX=0&resourcetype=HWCIT

Tripathy S, Pandey VN, Fang B, Salas F, Tyler BM. VMD: a community annotation database for oomycetes and microbial genomes. Nucleic acids research.. 2006;34:D379–81.  http://nar.oxfordjournals.org/cgi/content/full/34/suppl_1/D379

Tripathy S, Tyler BM. The repertoire of transfer RNA genes is tuned to codon usage bias in the genomes of Phytophthora sojae and Phytophthora ramorum. Molecular plant-microbe interactions : MPMI. 2006;19:1322–1328.  http://www.ncbi.nlm.nih.gov/pubmed/17153916?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum

Tyler BM, Tripathy S, Zhang X, et al. Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis. Science (New York, N.Y.). 2006;313:1261–1266.  http://www.ncbi.nlm.nih.gov/pubmed/16946064?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum

Zhang X, Scheuring C, Tripathy S, et al. An integrated BAC and genome sequence physical map of Phytophthora sojae. Molecular plant-microbe interactions : MPMI. 2006;19:1302–1310.  http://www.ncbi.nlm.nih.gov/pubmed/17153914?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum

2002


Tripathy S, Reddy GM. In vitro callus induction and plantlet regeneration from Indian cotton cultivars. Plant Cell Biotechnology and Molecular Biology. 2002;3:6.  http://staff.vbi.vt.edu/sutripa/papers/invitro_callus.pdf

Tripathy S, Reddy GM. A study on the influence of genotype, medium and additives on the induction of multiple shoots in Indian cotton cultivars. Asian Jr. of Microbiol. Biotech. Env. Sc.. 2002;4:5.  http://staff.vbi.vt.edu/sutripa/papers/multiple_shoot.pdf