PUBLICATIONS
Bassaganya-Riera J, Hontecillas R, Horne WT, et al. Conjugated linoleic modulates immune responses in patients with Mild to Moderately active Crohn's disease. Clinical Nutrition. 2012.
Bassaganya-Riera J, Viladomiu M, Pedragosa M, Simone C de, Hontecillas R. Immunoregulatory mechanisms underlying prevention of colitis-associated colorectal cancer by probiotic bacteria. PLOS One. 2012.
Bassaganya-Riera J, Viladomiu M, Pedragosa M, et al. Probiotic bacteria produce conjugated linoleic acid locally in the gut that targets macrophage PPARg to suppress colitis. PLOS One, In Press. 2012.
Czesny S. EJ & MP. Genetic divergence between freshwater and marine morphs of alewife (Alosa pseudoharengus): A 'next-generation' sequencing analysis. PLoS One. 2012.
Fondon JW 3rd, Martin A, Richards S, Gibbs RA, Mittelman D. Analysis of Microsatellite Variation in Drosophila melanogaster with Population-Scale Genome Sequencing. PLoS One. 2012;7:12.
Leidig J, Bisset K, Hall K, Mortveit H, Shams Z, Wendelsdorf K. A Job Submission System Architecture to Support the Public Health Modeling and Simulation Community.; 2012. ACM SIGHIT International Health Informatics Symposium (IHI).
Leidig J, Bisset K, Hall K, Mortveit H, Shams Z, Wendelsdorf K. A Job Submission System Architecture to Support the Public Health Modeling and Simulation Community.; 2012. ACM SIGHIT International Health Informatics Symposium (IHI).
Li JW, Schmieder R, Ward RM, Delenick J, Olivares EC, Mittelman D. SEQanswers: An open access community for collaboratively decoding genomes. Bioinformatics. 2012;13:13.
Liu Z, Pu Y, Li F, et al. Hybrid modeling and simulation of stochastic effects on progression through the eukaryotic cell cycle. The Journal of Chemical Physics. 2012;136:034105–34111. http://dx.doi.org/10.1063%2F1.3677190
Lu P, Hontecillas R, Horne WT, et al. Computational modeling-based discovery of novel classes of anti-inflammatory drugs that target lanthionine synthetase component C-like 2. PLOS One. 2012.
Mackay TFC RS Stone EA Barbadilla A Ayroles JF Zhu D Casillas S Han Y Magwire MM Cridland JM et al. The Drosophila Genetic Reference Panel: A Community Resource for Analysis of Population Genomics and Quantitative Traits. Nature. 2012;482(7384):173–8.
Marathe A, Lewis B, Chen J, Eubank S. Sensitivity of Household Transmission to Household Contact Structure and Size. PLOS One. 2012. www.plosone.org
Marchand JA, Peccoud J. Building block synthesis using the polymerase chain assembly method. Methods in molecular biology (Clifton, NJ). 2012;852:3.
Paschoal AR, Maracaja-Coutinho V, Setubal JC, Simoes ZL, Verjovski-Almeida S, Durham AM. Non-coding transcription characterization and annotation: A guide and web resource for non-coding RNA databases. RNA Biol. 2012;9:3.
Wendelsdorf KW J. Bassaganya-Riera K. Bisset S. Eubank R. Hontecillas and M. Marathe. ENteric Immunity SImulator: A tool for in silico study of gut immunopathologies. In: IEEE Trans. NanoBioScience. Atlanta, GA; 2012. IEEE International Conference on Bioinformatics and Biomedicine.
A. Acharya CPH S.N. Koenig H.A. Nichols C.L. Galindo H. R Garner W.H. Merrill R. B. Hinton and V. Garg. Inhibitory Role of Notch1 in Calcific Aortic Valve Disease. PLoS ONE. 2011.
Apolloni A, Marathe A, Pan Z. A longitudinal view of the relationship between social marginalization and obesity. College Park, Maryland, March 29-31, 2011.; 2011. Proceedings of 2011 International Conference on Social Computing, Behavioral-Cultural Modeling & Pre.
Barrett C, Channakeshava K, Eubank S, Kumar VSA, Marathe M. From biological and social network metaphors to coupled bio-social wireless networks. International Journal of Autonomous Adaptive Communications. 2011;4:122–144.
Barrett C, Channakeshava K, Eubank S, Kumar VSA, Marathe M. From biological and social network metaphors to coupled bio-social wireless networks. International Journal of Autonomous Adaptive Communications. 2011;4:122–144.
Barrett C, Channakeshava K, Eubank S, Kumar VSA, Marathe M. From biological and social network metaphors to coupled bio-social wireless networks. International Journal of Autonomous Adaptive Communications. 2011;4:122–144.
Barrett C, Channakeshava K, Eubank S, Kumar VSA, Marathe M. From biological and social network metaphors to coupled bio-social wireless networks. International Journal of Autonomous Adaptive Communications. 2011;4:122–144.
Bassaganya-Riera J, Diguardo M, Climent M, et al. Activation of PPARgamma and delta by dietary punicic acid ameliorates intestinal inflammation in mice. Br J Nutr. 2011;106(6):878–886. http://www.ncbi.nlm.nih.gov/pubmed/21736821
Bassaganya-Riera J, Guri AJ, Lu P, et al. Abscisic Acid Regulates Inflammation via Ligand-binding Domain-independent Activation of Peroxisome Proliferator-activated Receptor γ. Journal of Biological Chemistry. 2011;286(4):2504–2516. http://www.jbc.org/content/286/4/2504.abstract
Bisset K J. Bassaganya-Riera A. Carbo S. Eubank R. Hontecillas S. Hoops M. Marathe Y. Mei K.W. Wendelsdorf D. Xie and J-S. Yeom. High-performance interaction-based simulation of gut immunopathologies with ENISI.; 2011. Ieee Ipdps.
Bisset K, Aji A, Marathe M, Feng W. High-Performance biocomputing for simulating the spread of contagion over large contact networks.. 2011.
Bisset K, Aji A, Marathe M, Feng W. High-Performance biocomputing for simulating the spread of contagion over large contact networks.. 2011.
Bisset K, Ashwin A, Marathe M, Feng W-C. High performance biocomputing for simulating the spread of contagion over large contact networks. Orlando, Florida, February 3-5, 2011; 2011. Proceedings of 1st IEEE International Conference on Computational Advances in Bio and Medical Scienc.
Bisset K, Ashwin A, Marathe M, Feng W-C. High performance biocomputing for simulating the spread of contagion over large contact networks. Orlando, Florida, February 3-5, 2011; 2011. Proceedings of 1st IEEE International Conference on Computational Advances in Bio and Medical Scienc.
Bisset K, Chen J, Kuhlman C, Kumar VSA, Marathe M. Interaction-based HPC modeling of social, biological and economic contagions over large networks.; 2011. Winter Simulation Conference.
Bisset K, Chen J, Kuhlman C, Kumar VSA, Marathe M. Interaction-based HPC modeling of social, biological and economic contagions over large networks.; 2011. Winter Simulation Conference.
Boyle K, Davis G, Estabrooks P, et al. Translational economic research: Integrating genetics, neurosciences & behavioral sciences. Association of Environmental and Resource Economists. 2011;31:15–25.
Cai RM, Lewis J, Yan SC, et al. The Plant Pathogen Pseudomonas syringae pv. tomato Is Genetically Monomorphic and under Strong Selection to Evade Tomato Immunity. Plos Pathogens. 2011;7.
Channakeshava K, Bisset K, Marathe M, Vullikanti A, Yardi S. High performance scalable and expressive modeling environment to study mobile malware in large dynamic networks. Anchorage, Alaska, May 16-20, 2011; 2011. Proceedings of 25th IEEE International Parallel & Distributed Processing Symposium.
Channakeshava K, Bisset K, Marathe M, Vullikanti A, Yardi S. High performance scalable and expressive modeling environment to study mobile malware in large dynamic networks. Anchorage, Alaska, May 16-20, 2011; 2011. Proceedings of 25th IEEE International Parallel & Distributed Processing Symposium.
Channakeshava K, Bisset K, Marathe M, Vullikanti A, Yardi S. High performance scalable and expressive modeling environment to study mobile malware in large dynamic networks. Anchorage, Alaska, May 16-20, 2011; 2011. Proceedings of 25th IEEE International Parallel & Distributed Processing Symposium.
Courtot M JN Kn. Controlled vocabularies and semantics in systems biology. Molecular Systems Biology. 2011;(7):543.
D. Wibberg JB A. Goesmann F. Kollin B. Scharf S. Schneiker-Bekel R. Sczcepanowski J.C. Setubal R. Schmitt A. P. Complete Genome Sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, Reveals a Tripartite Genome Consisting of a Circular and a Linear Chromosome and an Accessory Plasmid but Lacking a Tumor-Inducing Ti-Plasmid. Journal of Biotechnology. 2011;155:50–62.
D.Cortes WS V. Hower G. Blekherman R. Laubenbacher S. Akman S. Torti V. Shulaev. Differential gene expression in normal and transformed human mammary epithelial cells in response to oxidative stress. Free Radical Biology and Medicine. 2011.
Dharmarajan L, Kraszewski JL, Mukhopadhyay B, Dunten PW. Structure of an archaeal-type phosphoenolpyruvate carboxylase sensitive to inhibition by aspartate. Proteins. 2011;79:1820–1829. http://www.ncbi.nlm.nih.gov/pubmed/21491491
Dong S Yin W. Kong G. Yang X. Gutob D. Chen Q. Kale S.D. Sui Y. Zhang Z. Dou D. Zheng X Gijzen M. Tyler B.M. Wang Y. Phytophthora sojae avirulence effector Avr3b is a secreted NADH and ADP-ribose pyrophosphorylase that modulates plant immunity". PLoS Pathogens. 2011;7(11):e1002353.
Dong S, Yu D, Cui L, et al. Sequence variants of the Phytophthora sojae RxLR effector Avr3a/5 are differentially recognized by Rps3a and Rps5. PLoS ONE. 2011.
Dong S, Yu D, Cui L, et al. Sequence variants of the Phytophthora sojae RXLR effector Avr3a/5 are differentially recognized by Rps3a and Rps5 in soybean. PLoS One. 2011;6:e20172. http://www.ncbi.nlm.nih.gov/pubmed/21779316
Dutta T, Khan M, Kumar VSA, Marathe M, Zhao Z. Structural and relational properties of social contact networks with applications to public health informatics. Athens, Greece, September 5-9, 2011; 2011. Proceedings of the European Conference on Machine Learning and Principles and Practice to Knowledge .
E. Dimitrova LDG F. Hinkelmann A. Jarrah R. Laubenbacher B. Stigler M. Stillman P. Vera-Licona. Parameter estimation for Boolean models of biological systems. J. Theor. Comp. Sci.. 2011;412:2816–2826.
F. Hinkelmann DM A. Jarrah and R. Laubenbacher. A mathematical framework for agent-based models of complex biological networks. Bull. Math. Biol.. 2011;73:1583–1603.
F. Hinkelmann MB B. Guang R. McNeill G. Blekherman A. Veliz-Cuba and R. Laubenbacher. ADAM: Analysis of the Dynamics of Algebraic Models of Biological Systems using Computer Algebra. BMC Bioinformatics. 2011;288:66–72.
F. I. Staquicini MC-V M. G. Kolonin M. Trepel J. K. Edwards D. N. Nunes A. Sergeevad E. Efstathiou J. Sun N. F. Almeida S. Tub G. H. Botz M. J. Wallace D. J. O'Connell S. Krajewski J. E. Gershenwald J. J. Molldrem A. L. Flamm E. Koivunen R. D. Pentz E. Dias-Neto J.C. Setubal D. J. Cahill P. Troncoso K. Don C. J. Logothetis R. L. Sidman R. Pasqualini and W. Arap. Vascular ligand-receptor mapping by direct combinatorial selection in cancer patients. Proceedings of the National Academy of Sciences. 2011;108.
G. Blekherman RL D. Cortes P. Mendes F. Torti S. Akman S. Torti and V. Shulaev. Bioinformatics tools for cancer metabolomics. Metabolomics. 2011.
Galindo CL, McIver LJ, Tae H, et al. Sporadic breast cancer patients' germline DNA exhibit an AT-rich microsatellite signature. Genes Chromosomes Cancer. 2011;50(4):275–283. http://www.ncbi.nlm.nih.gov/pubmed/21319262
Gu B Kale S.D. Wang Q. Pan Q. Cao H. Meng Y. Kang Z. Tyler B.M. Shan W. The secreted protein Ps87 of Puccinia striiformis is conserved in diverse fungal pathogens and contains an RXLR-like motif sufficient for translocation into plant cells. PLoS One. 2011;6(11):e27217.
H. Tae SS R. Settlage D. Preston G. Adams H.R. Garner. Revised genome sequence of Brucella suis 1330. Journal of Bacteriology. 2011.
Hongtao Zhang JCS Xiaobei Zhan Zhiyong Zheng Dingqiang Chen Jianrong Wu Hongtao. Component identification of Electron Transport Chains in Agrobacterium sp. ATCC 31749 and its genome-specific prediction using comparative genome and phylogenetic trees analysis. Journal of Industrial Microbiology and Biotechnology. 2011;38:667–677.
Hontecillas R, Horne WT, Climent M, et al. Immunoregulatory mechanisms of macrophage PPAR-γ in mice with experimental inflammatory bowel disease. Mucosal Immunol. 2011;4(3):304–313. http://dx.doi.org/10.1038%2Fmi.2010.75
J. Chifman AK P. Neupane I. Williams B. Leung P. Mendes V. Hower F.M. Torti S.A. Akman S.V. Torti and R. Laubenbacher. The core control system of intracellular iron homeostasis: a mathematical model. J. Theor. Biol.. 2011.
J.W. Uhr MLH E.P Frenkel N.L. Lane R. Ashfaq H. Y. Liu D. R. Rana L. Cheng A. T. Lin G. A. Hughes JXJ Zhang H.R. Garner. Molecular Profiling of Individual Tumor Cells by Hyperspectral Microscopic Imaging. Translational Research. 2011.
Jones JB, Potnis N, Krasileva K, et al. Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper. Bmc Genomics. 2011;12.
Kale SD. How Oomycete and Fungal Proteins Enter Plant and Animal Cells. Davis, CA; 2011. University of California Davis.
Kale SD. Unraveling the Entry Mechanism of Oomycete and Fungal Effector Proteins into host cells. St. Paul, MN; 2011. Borlaug Global Rust Initiative Technical Workshop.
Kale SD, Gu B, Capelluto DGS, et al. Characterization of Oomycete Effector Entry in Plant and Animal Cells. Asilomar, California; 2011. Oomycete Molecular Genetics Network Meeting.
Kim J, Kumar VSA, Marathe A, Pei G, Saha S, Subbiah B. Impact of geographic complementarity in dynamic spectrum access. Aachen, Germany, May 3-6, 2011, In press; 2011. Proceedings of IEEE Dynamic Spectrum Access Networks (DySPAN).
Kim J, Kumar VSA, Marathe A, Pei G, Saha S, Subbiah B. Impact of geographic complementarity in dynamic spectrum access. Aachen, Germany, May 3-6, 2011, In press; 2011. Proceedings of IEEE Dynamic Spectrum Access Networks (DySPAN).
Kuhlman C, Kumar VSA, Marathe M, et al. A general-purpose graph dynamical system modeling framework. Phoenix, Arizona, December 11-14, 2011; 2011. Proceedings of the 2011 Winter Simulation Conference.
Kuhlman C, Kumar VSA, Marathe M, et al. A general-purpose graph dynamical system modeling framework. Phoenix, Arizona, December 11-14, 2011; 2011. Proceedings of the 2011 Winter Simulation Conference.
Kuhlman C, Kumar VSA, Marathe M, et al. A general-purpose graph dynamical system modeling framework. Phoenix, Arizona, December 11-14, 2011; 2011. Proceedings of the 2011 Winter Simulation Conference.
Kuhlman C, Kumar VSA, Marathe M, et al. A general-purpose graph dynamical system modeling framework. Phoenix, Arizona, December 11-14, 2011; 2011. Proceedings of the 2011 Winter Simulation Conference.
Kuhlman C, Kumar VSA, Marathe M, Ravi S, Rosenkrantz D. Effects of opposition on the diffusion of complex contagions in social networks: An empirical study. College Park, Maryland, March 29-30, 2011; 2011. 2011 International Conference on Social Computing, Behavioral-Cultural Modeling and Prediction (Post.
Kuhlman C, Kumar VSA, Marathe M, Ravi S, Rosenkrantz D. Effects of opposition on the diffusion of complex contagions in social networks: An empirical study. College Park, Maryland, March 29-30, 2011; 2011. 2011 International Conference on Social Computing, Behavioral-Cultural Modeling and Prediction (Post.
Kuhlman C, Kumar VSA, Marathe M, et al. A bi-threshold model of complex contagion and its application to the spread of smoking behavior. San Diego, CA; 2011. Social Network Mining and Analysis (SNA) Workshop held in conjunction with the KDD 2011. http://www.snakdd.com/pc.html
Kuhlman C, Kumar VSA, Marathe M, et al. A bi-threshold model of complex contagion and its application to the spread of smoking behavior. San Diego, CA; 2011. Social Network Mining and Analysis (SNA) Workshop held in conjunction with the KDD 2011. http://www.snakdd.com/pc.html
Kuhlman C, Kumar VSA, Marathe M, et al. A bi-threshold model of complex contagion and its application to the spread of smoking behavior. San Diego, CA; 2011. Social Network Mining and Analysis (SNA) Workshop held in conjunction with the KDD 2011. http://www.snakdd.com/pc.html
Laubenbacher AV-C and R. On the computation of fixed points in Boolean networks. J. Appl. Math. Comp.. 2011.
Laubenbacher R. Invited Lecture – Algebraic geometry in systems biology. Oslo: University of Oslo Norway; 2011.
Laubenbacher R. Invited Lecture – Patterns are everywhere: how and why? Blacksburg VA: Kids' Tech University Virginia Tech; 2011.
Laubenbacher R. Invited Lecture – A systems biology view of cancer. New Orleans LA: School of Pharmacy Xavier University; 2011.
Laubenbacher R. Structure and dynamics of polynomial dynamical systems. Atlanta; 2011. NSF Engineering Research and Innovation.
Laubenbacher R. A systems biology approach to cancer drug discovery. In: Dubitzky W Wolkenhauer O Cho K.H. Yokota H., ed. Encyclopedia of Systems Biology. New York: Springer Verlag; 2011.
Lawhon SD, Khare S, Rossetti CA, et al. Role of SPI-1 secreted effectors in acute bovine response to Salmonella enterica Serovar Typhimurium: a systems biology analysis approach. PLoS One. 2011;6:e26869. http://www.ncbi.nlm.nih.gov/pubmed/22096503
Lee B, McGlone S, Wong K, et al. Modeling the spread of methicillin-resistant staphylococcus aureus (MRSA) outbreaks throughout the hospitals in Orange County, California. Infection Control and Hospital Epidemiology. 2011;32:562–572.
Lee B, Song Y, McGlone S, et al. Social network analysis of paitent sharing among hospitals in Orange County, California. American Journal of Public Health. 2011;101:707–713.
Leidig J, Fox E, Hall K, Marathe M, Mortveit H. SimDL: A model ontology driven digital library for simulation systems. Ottawa, Canada, June 13-17, 2011; 2011. Proceedings of ACM/IEEE Joint Conference on Digital Libraries In press.
Leidig J, Fox E, Hall K, Marathe M, Mortveit H. SimDL: A model ontology driven digital library for simulation systems. Ottawa, Canada, June 13-17, 2011; 2011. Proceedings of ACM/IEEE Joint Conference on Digital Libraries In press.
Leidig J, Fox E, Marathe M. Simulation Tools for Producing Metadata Description Sets Covering Simulation-Based Content Collections.; 2011. IASTED International Conference on Modelling, Simulation, and Identification (MSI).
Leidig J, Fox EA, Hall K, Marathe M, Mortveit H. Improving simulation management systems with model ontologies. Ottawa, Canada, June 13-17, 2011; 2011. Proceedings of ACM/IEEE Joint Conference on Digital Libraries In press.
Leidig J, Fox EA, Hall K, Marathe M, Mortveit H. Improving simulation management systems with model ontologies. Ottawa, Canada, June 13-17, 2011; 2011. Proceedings of ACM/IEEE Joint Conference on Digital Libraries In press.
Lewis B, Kleinman K, Abrams A, Eubank S. in silico surveillance: evaluating outbreak detection with agent-based simulations.. 2011.
Lewis SN, Brannan L, Guri AJ, et al. Dietary α-Eleostearic Acid Ameliorates Experimental Inflammatory Bowel Disease in Mice by Activating Peroxisome Proliferator-Activated Receptor-γ. PLoS One. 2011;6(8):e24031. http://dx.doi.org/10.1371%2Fjournal.pone.0024031
Lu P, Bevan D, Lewis S, Hontecillas R, Bassaganya-Riera J. Molecular modeling of lanthionine synthetase component C-like protein 2: a potential target for the discovery of novel type 2 diabetes prophylactics and therapeutics. Journal of Molecular Modeling. 2011;17(3):543–553. http://dx.doi.org/10.1007%2Fs00894-010-0748-y
Ma D & MP. Ephemeral association between gene CG5762 and hybrid male sterility in Drosophila sibling species. Journal of Molecular Evolution. 2011;In Press.
Ma Y, Bisset K, Chen J, Deodhar S, Marathe M. Formal Specification and Experimental Analysis of an Interactive Epidemic Simulation Framework. Banf, CANADA; 2011. ESCAPE: Extreme Scale Computing APplication Enablement – Modeling and Tools. http://www.cs.nthu.edu.tw/~cherung/workshop/escape/
Ma Y, Bisset K, Chen J, deodhar S, Marathe M. Efficient Implementation Of Complex Interventions In Large Scale Epidemic Simulations.; 2011. Winter Simulation Conference.
Ma Y, Bisset K, Chen J, Deodhar S, Marathe M. Formal Specification and Experimental Analysis of an Interactive Epidemic Simulation Framework. Banf, CANADA; 2011. ESCAPE: Extreme Scale Computing APplication Enablement – Modeling and Tools. http://www.cs.nthu.edu.tw/~cherung/workshop/escape/
Ma Y, Bisset K, Chen J, deodhar S, Marathe M. Efficient Implementation Of Complex Interventions In Large Scale Epidemic Simulations.; 2011. Winter Simulation Conference.
Marathe A. Consumers' Preference for Renewable Energy in the Southwest USA. Energy Economics. 2011.
Marathe A, Lewis B, Chen J, Eubank S. Sensitivity of Household Transmission to Household Contact Structure and Size. PLOS One. 2011. www.plosone.org
McIver LJ, Fondon JW 3rd, Skinner MA, Garner HR. Evaluation of microsatellite variation in the 1000 Genomes Project pilot studies is indicative of the quality and utility of the raw data and alignments. Genomics. 2011. http://www.ncbi.nlm.nih.gov/pubmed/21223998
N. Jalan VA D. Kumar F. Yu J. Jones J. Graham J.C. Setubal and N. Wang. Comparative genomic analysis of Xanthomonas axonopodis pv. citrumelo FL-1195 causing citrus bacterial spot and related strains provides insights into virulence and host-specificity. Journal of Bacteriology. 2011;193:6342–6357.
P. M-VMJ & M. Misexpression of testicular microRNA in sterile Xenopus hybrids points to tetrapod specific microRNAs associated with male fertility. Journal of Molecular Evolution. 2011.
P.N. Collen JC M.S. Reis M. Pedersen J.C. Setubal A.M. Varani P. Colepicolo and M.C. Oliveira. Analysis of expressed sequence tags from the agarophyte Gracilaria tenuistipitata (Rhodophyta). Journal of Applied Phycology. 2011.
Pei G, Kumar VSA, Parthasarathy S, Srinivasan A. Approximation algorithms for throughput maximization in wireless networks with delay constraints. Shanghai, China, April 10-15, 2011.; 2011. Proceedings of IEEE INFOCOM. http://www.cs.umd.edu/~srin/PDF/2010/chants-conf.pdf
Plett JM, Kemppainen M, Kale SD, Kohler A, Legu. Secreted effector protein of Laccaria bicolor is required for symbiosis development. Current Biology. 2011.
Pyysalo STO Rafal Rak Dan Sullivan Chunhong Mao Chunxia Wang Bruno Sobral Jun. Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011. Portland, Oregon, USA; 2011:26–35. Proceedings of Association for Computational Linguistics: Human Language Technologies.
Pyysalo STO Rafal Rak Dan Sullivan Chunhong Mao Chunxia Wang Bruno Sobral Jun. Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011. Portland, Oregon, USA; 2011:26–35. Proceedings of Association for Computational Linguistics: Human Language Technologies.
Pyysalo STO Rafal Rak Dan Sullivan Chunhong Mao Chunxia Wang Bruno Sobral Jun. Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011. Portland, Oregon, USA; 2011:26–35. Proceedings of Association for Computational Linguistics: Human Language Technologies.
Rouxel T, Grandaubert J, Hane JK, et al. Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations. Nat Commun. 2011;2:202. http://www.ncbi.nlm.nih.gov/pubmed/21326234
Shulaev V, Sargent DJ, Crowhurst RN, et al. The genome of woodland strawberry (Fragaria vesca). Nature Genetics. 2011;43:109–151.
Small BG MCBW Allmendinger R Pahle J L. Efficient discovery of anti-inflammatory small-molecule combinations using evolutionary computing. Nature Chem. Biol. 2011;(7):902.
Sobral B and AW. Comparative genomics and phylogenomics of the Brucella. In: O, ed. Brucella: Molecular microbiology and Genetics. Horizon Scientific Press; 2011.
Sobral B and AW. Comparative genomics and phylogenomics of the Brucella. In: O, ed. Brucella: Molecular microbiology and Genetics. Horizon Scientific Press; 2011.
Swarup S, Apolloni A, Fagyal Z. A model of norm emergence and innovation in language change. Yolum, Tumer, Stone, Sonenberg, eds. Taipei, Taiwan, May 2-6, 2011; 2011. Proceedings of the 10th International Conference on Autonomous Agents and Multiagent Systems (AAMAS).
Wang Q, Han C, Ferreira AO, et al. Transcriptional programming and functional interactions within the Phytophthora sojae RXLR effector repertoire. Plant Cell. 2011;23:2064–2086. http://www.ncbi.nlm.nih.gov/pubmed/21653195
Wang Q, Han C, Ferreira AO, et al. Transcriptional programming and functional interactions within the Phytophthora sojae RXLR effector repertoire. Plant Cell. 2011;23:2064–2086. http://www.ncbi.nlm.nih.gov/pubmed/21653195
wendelsdorf K, Bassaganya-Riera J, Bisset K, eubank S, hontecillas-Magarzo R, marathe M. ENteric Immunity SImulator: A tool for in silico study of gut immunopathologies. San Francisco, CA; 2011. Aai.
wendelsdorf K, Bassaganya-Riera J, Bisset K, eubank S, hontecillas-Magarzo R, marathe M. ENteric Immunity SImulator: A tool for in silico study of gut immunopathologies. San Francisco, CA; 2011. Aai.
wendelsdorf K, Bassaganya-Riera J, Bisset K, eubank S, hontecillas-Magarzo R, marathe M. ENteric Immunity SImulator: A tool for in silico study of gut immunopathologies. San Francisco, CA; 2011. Aai.
Wendelsdorf KW, Bassaganya-Riera J, Bisset K, Eubank S, R. H, Marathe M. ENteric Immunity SImulator: A tool for in silico study of gut immunopathologies. Atlanta, GA; 2011. Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine.
Xia H, Chen J, Marathe M, Mortveit H. Synthesis and refinement of detailed subnetworks in a social contact network for epidemic simulations. College Park, Maryland, March 29-31, 2011; 2011. Proceedings of the International Conference on Social Computing, Behavioral Modeling and Prediction .
Xia H, Chen J, Marathe M, Mortveit H. Synthesis and refinement of detailed subnetworks in a social contact network for epidemic simulations. College Park, Maryland, March 29-31, 2011; 2011. Proceedings of the International Conference on Social Computing, Behavioral Modeling and Prediction .
Zhao Z, Wang G, Butt A, Khan M, Kumar VSA, Marathe M. SAHad: Subgraph analysis in massive networks using hadoop. Seattle, Washington, November 12-18, 2011; 2011. Proceedings of SC11.
Aji A, Feng W-C, Bisset K. Modeling kernel offload methodologies in multi-GPU environment: A case study. Anchorage, Alaska, May 16-20, 2011; 2010. Proceedings of 25th IEEE International Parallel & Distributed Processing Symposium.
Balaji P, Feng W, Lin H, et al. Global-scale distributed I/O with ParaMEDIC. Concurrency and Computation: Practice and Experience. 2010:n/a-n/a. http://dx.doi.org/10.1002%2Fcpe.1590
Barrett C, Beckman R, Channakeshava K, et al. Cascading failures in multiple infrastructures: From transportation to communication network. Beijing, China, September 20-22, 2010; 2010. Proceedings of Interacting Critical Infrastructures for the 21st Century. http://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=05617569
Barrett C, Beckman R, Channakeshava K, et al. Cascading failures in multiple infrastructures: From transportation to communication network. Beijing, China, September 20-22, 2010; 2010. Proceedings of Interacting Critical Infrastructures for the 21st Century. http://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=05617569
Barrett C, Beckman R, Channakeshava K, et al. Cascading failures in multiple infrastructures: From transportation to communication network. Beijing, China, September 20-22, 2010; 2010. Proceedings of Interacting Critical Infrastructures for the 21st Century. http://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=05617569
Barrett C, Bisset K, Leidig J, Marathe A, Marathe M. An integrated modeling environment to study the coevolution of networks, individual behavior and epidemics. AI Magazine. 2010;31:75–87.
Barrett C, Bisset K, Leidig J, Marathe A, Marathe M. An integrated modeling environment to study the coevolution of networks, individual behavior and epidemics. AI Magazine. 2010;31:75–87.
Barrett C, Bisset K, Leidig J, Marathe A, Marathe M. An integrated modeling environment to study the coevolution of networks, individual behavior and epidemics. AI Magazine. 2010;31:75–87.
Barrett C, Bisset K, Leidig J, Marathe A, Marathe M. An integrated modeling environment to study the coevolution of networks, individual behavior and epidemics. AI Magazine. 2010;31:75–87.
Bassaganya-Riera J A.J. Guri P. Lu M. Climent A. Carbo B.W. Sobral C. Evans W.T. Horne S.N. Lewis D.R. Bevan and R. Hontecillas. Abscisic acid Regulates Inflammation via Ligand-Binding Domain-Independent Activation of PPAR g. Biol. Chem.. 2010;In Press.
Bavarva JH, Narasimhacharya AV. Leucas cephalotes regulates carbohydrate and lipid metabolism and improves antioxidant status in IDDM and NIDDM rats. J Ethnopharmacol. 2010;127:98–102. http://www.ncbi.nlm.nih.gov/pubmed/19799987
Beckman R, Channakeshava K, Huang F, et al. Implications of dynamic spectrum access on the efficiency of primary wireless market. Singapore, April 6-9, 2010; 2010:1–12. Proceedings of IEEE International New Frontiers in Dynamic Spectrum Access Networks. http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=5457849
Beckman R, Channakeshava K, Huang F, et al. Implications of dynamic spectrum access on the efficiency of primary wireless market. Singapore, April 6-9, 2010; 2010:1–12. Proceedings of IEEE International New Frontiers in Dynamic Spectrum Access Networks. http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=5457849
Beckman R, Channakeshava K, Huang F, et al. Implications of dynamic spectrum access on the efficiency of primary wireless market. Singapore, April 6-9, 2010; 2010:1–12. Proceedings of IEEE International New Frontiers in Dynamic Spectrum Access Networks. http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=5457849
Bisset K, Chen J, Feng A, Ma Y, Marathe M. INDEMICS : Interactive Epidemic Simulation Framework for Complex Public Health Strategy Studies.; 2010. International Conference on Supercomputing.
Bisset K, Chen J, Feng A, Ma Y, Marathe M. INDEMICS : Interactive Epidemic Simulation Framework for Complex Public Health Strategy Studies.; 2010. International Conference on Supercomputing.
Bisset K, Chen J, Feng X, Ma Y, Marathe M. Indemics: an interactive data intensive framework for high performance epidemic simulation. Tsukuba, Japan, June 1-4, 2010; 2010. Proceedings of 24th International Conference on Supercomputing. http://portal.acm.org/citation.cfm?id=1810085.1810118
Bisset K, Chen J, Feng X, Ma Y, Marathe M. Indemics: an interactive data intensive framework for high performance epidemic simulation. Tsukuba, Japan, June 1-4, 2010; 2010. Proceedings of 24th International Conference on Supercomputing. http://portal.acm.org/citation.cfm?id=1810085.1810118
Buss SN, Hamano S, Vidrich A, et al. Members of the Entamoeba histolytica transmembrane kinase family play non-redundant roles in growth and phagocytosis. Int J Parasitol. 2010;40:833–843. http://www.ncbi.nlm.nih.gov/pubmed/20083116
Channakeshava K, Bisset K, Kumar A, Marathe M, Yardi S. Fast-EpiNet: An efficient and scalable framework for simulating wireless epidemics on multi-core clusters. San Diego, CA, September 13-16; 2010. 39th International Conference on Parallel Processing.
Channakeshava K, Bisset K, Kumar A, Marathe M, Yardi S. Fast-EpiNet: An efficient and scalable framework for simulating wireless epidemics on multi-core clusters. San Diego, CA, September 13-16; 2010. 39th International Conference on Parallel Processing.
Chen J, Huang F, Khan M, Marathe M, Stretz P, Xia H. The effect of demographic and spatial variability on epidemics: A comparison between Beijing, Delhi and Los Angeles. Aalborg, Denmark; 2010. Proceedings of 10th International Conference on Current Research Information Systems.
Chen J, Marathe A, Marathe M. Coevolution of epidemics, social networks and individual behaviors: A case study. In: Advances in Social Computing. Bethesda, MD: Springer Berlin / Heidelberg; 2010:218–227. Lecture Notes in Computer Science 6007. http://www.springerlink.com/content/n28m261152650316/
Chen J, Marathe A, Marathe M. Coevolution of epidemics, social networks and individual behaviors: A case study. In: Advances in Social Computing. Bethesda, MD: Springer Berlin / Heidelberg; 2010:218–227. Lecture Notes in Computer Science 6007. http://www.springerlink.com/content/n28m261152650316/
Demir E, Cary MP, Paley S, et al. The BioPAX community standard for pathway data sharing (vol 28, pg 935, 2010). Nature Biotechnology. 2010;28:1308.
Dias U, Dias Z, Setubal JC. A Simulation Tool for the Study of Symmetric Inversions in Bacterial Genomes. Ottawa: Springer; 2010. RECOMB Comparative Genomics Lecture Notes in Bioinformatics.
Dou D, Kale SD, Liu T, et al. Different domains of Phytophthora sojae effector Avr4/6 are recognized by soybean resistance genes Rps4 and Rps6. Mol Plant Microbe Interact. 2010;23(4):425–435. http://www.ncbi.nlm.nih.gov/pubmed/20192830
Dyer MD, Neff C, Dufford M, et al. The human-bacterial pathogen protein interaction networks of Bacillus anthracis, Francisella tularensis, and Yersinia pestis. PLoS One. 2010;5:e12089. http://www.ncbi.nlm.nih.gov/pubmed/20711500
Eubank S, Kumar VSA, Khan M, Marathe M, Barrett C. Beyond Degree Distributions: Local to Global Structure of Social Contact Graphs. In: Advances in Social Computing, Third International Conference on Social Computing, Behavioral Modeling, and Prediction (SBP). Vol. 6007. Springer Berlin / Heidelberg; 2010:1. http://www.springerlink.com/content/98592811k4k95680/
Eubank S, Kumar VSA, Khan M, Marathe M, Barrett C. Beyond Degree Distributions: Local to Global Structure of Social Contact Graphs. In: Advances in Social Computing, Third International Conference on Social Computing, Behavioral Modeling, and Prediction (SBP). Vol. 6007. Springer Berlin / Heidelberg; 2010:1. http://www.springerlink.com/content/98592811k4k95680/
Eubank S, Kumar VSA, Khan M, Marathe M, Barrett C. Beyond Degree Distributions: Local to Global Structure of Social Contact Graphs. In: Advances in Social Computing, Third International Conference on Social Computing, Behavioral Modeling, and Prediction (SBP). Vol. 6007. Springer Berlin / Heidelberg; 2010:1. http://www.springerlink.com/content/98592811k4k95680/
Eubank S, Kumar VSA, Khan M, Marathe M, Barrett C. Beyond Degree Distributions: Local to Global Structure of Social Contact Graphs. In: Advances in Social Computing, Third International Conference on Social Computing, Behavioral Modeling, and Prediction (SBP). Vol. 6007. Springer Berlin / Heidelberg; 2010:1. http://www.springerlink.com/content/98592811k4k95680/
Galindo CL, McCormick JF, Bubb VJ, et al. A long AAAG repeat allele in the 5' UTR of the ERR-gamma gene is correlated with breast cancer predisposition and drives promoter activity in MCF-7 breast cancer cells. Breast Cancer Res Treat. 2010. http://www.ncbi.nlm.nih.gov/pubmed/21153485
Galindo CL, Sha J, Moen ST, et al. Comparative Global Gene Expression Profiles of Wild-Type Yersinia pestis CO92 and Its Braun Lipoprotein Mutant at Flea and Human Body Temperatures. Comp Funct Genomics. 2010:342168. http://www.ncbi.nlm.nih.gov/pubmed/20508723
Han B, Hui P, Kumar VSA, Marathe M, Pei G, Srinivasan A. Cellular traffic offloading through opportunistic communications: A case study. Chicago, Ilinois, September 2010.: Acm; 2010:31–38. Proceedings of the 5th ACM Workshop on Challenged Networks (CHANTS). http://portal.acm.org/citation.cfm?id=1859943
Han B, Hui P, Kumar VSA, Marathe M, Pei G, Srinivasan A. Cellular traffic offloading through opportunistic communications: A case study. Chicago, Ilinois, September 2010.: Acm; 2010:31–38. Proceedings of the 5th ACM Workshop on Challenged Networks (CHANTS). http://portal.acm.org/citation.cfm?id=1859943
Hasan MR, Rahman M, Jaques S, Purwantini E, Daniels L. Glucose 6-phosphate accumulation in mycobacteria: implications for a novel F420-dependent anti-oxidant defense system. J Biol Chem. 2010;285:19135–19144. http://www.ncbi.nlm.nih.gov/pubmed/20075070
Huang S, Avery T, Song Y, et al. Quantifying inter-hospital patient sharing as a mechanism for infectious disease spread. Infection Control and Hospital Epidemiology. 2010;31:1160–1169.
Jarrah AS, Laubenbacher R, Veliz-Cuba A. The Dynamics of Conjunctive and Disjunctive Boolean Network Models. Bulletin of Mathematical Biology. 2010;72:1425–1447.
Jesmin, Rashid M, Jamil H, Hontecillas R, Bassaganya-Riera J. Gene regulatory network reveals oxidative stress as the underlying molecular mechanism of type 2 diabetes and hypertension. BMC Medical Genomics. 2010;3(1):45. http://www.biomedcentral.com/1755-8794/3/45
Kale SD. Mechanism of Oomycete and Fungal Effector Protein Translocation into Plant Host Cells. Ocean City, MD; 2010. American Phytopathological Society, Potomac Division Meeting.
Kale SD, Gu B, Capelluto DGS, et al. Characterization of RXLR motifs from Fungal and Oomycete effectors. Toulouse, France; 2010. Oomycetes Molecular Genetics Network Meeting.
Kangas-Kontio T, Kakko S, Tamminen M, et al. Genome scan for loci regulating HDL cholesterol levels in Finnish extended pedigrees with early coronary heart disease. Eur J Hum Genet. 2010;18(5):604–613. http://www.ncbi.nlm.nih.gov/pubmed/19935834
Kuhlman C, Kumar VSA, Marathe M, Ravi S, Rosenkrantz D. Finding critical nodes for inhibiting diffusion of complex contagions in social networks. In: Proceeding of European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases. Vol. Lncs 6322. Barcelona, Spain, September 20-24, 2010.: Springer Berlin / Heidelberg; 2010:111–127. http://www.springerlink.com/content/b8h32020ux0571v0/
Kuhlman C, Kumar VSA, Marathe M, Ravi S, Rosenkrantz D. Finding critical nodes for inhibiting diffusion of complex contagions in social networks. In: Proceeding of European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases. Vol. Lncs 6322. Barcelona, Spain, September 20-24, 2010.: Springer Berlin / Heidelberg; 2010:111–127. http://www.springerlink.com/content/b8h32020ux0571v0/
Kuhlman C, Lewis B, Beckman R, Eubank S, Dutta T. Clustering method incorporating network topology and dynamics. Orlando, Florida, April 12-14, 2010; 2010. Proceedings of Society for Modeling & Simulation International.
Kuhlman C, Marathe M, Ravi SS, Rosenkrantz D. Exploiting network structure in enhancing diffusion of complex contagions. Barcelona, Spain, September 20-24, 2010; 2010:20–33. Proceedings of Analysis of Complex Networks (ACNE) Workshop of the ECML PKDD 2010 Conference. http://kdd.isti.cnr.it/acne/ACNE-2010-PROCEEDINGS.pdf
Kumar A, Marathe M, Parthasarathy S. Cross-layer capacity estimation and throughput maximization in wireless networks. In: Cormode G, Thottan M, eds. Algorithms for Next Generation Networks. Springer; 2010:67–98. http://www.springerlink.com/content/q4308764268h04mv/
Kumar VSA, Rajaraman R, Sundaram R, Sun Z. Existence theorems and approximation algorithms for generalized network security games. Genoa, Italy; 2010:348–357. Proceedings of 30th International Conference on Distributed Computing Systems (ICDCS).
Kumar VSA, Tripathi R, Valkanova E. On strategy improvement algorithms for simple stochastic games. In: Algorithms andComplexity. Rome, Italy: Springer Berlin / Heidelberg; 2010:240–251. Lecture Notes in Computer Science 6078. http://www.springerlink.com/content/382627283g1486h0/
Kummer U, Sahle S, Hoops S, Mendes P. Assessing the importance of individual players in biochemical networks in a global way. Febs Journal. 2010;277:17–18.
Laubenbacher ED L.D. Garcia F. Hinkelmann A. Jarrah B. Stigler M. Stillman P. Vera-Licona. Parameter estimation for Boolean models. J. Theor. Comp. Sci.. 2010.
Laubenbacher FH and R. Boolean models of bistable biological systems. Discrete and Cont. Dynamical Systems. 2010.
Laubenbacher R. Mathematics-aided medicine.. 2010.
Lawrence CB, Tyler BM, Kale SD, Rumore AJ. Allergen Entry Therapeutic Technology.; 2010.
Leidig J, Fox E, Marathe M, Mortveit H. Epidemiology experiment and simulation management through schema-based digital libraries. Glasglow, Scotland, September 6-10, 2010; 2010. Proceedings of the 2nd DL.org workshop during the 14th European Conference on Digital Libraries.
Leidig J, Fox E, Marathe M, Mortveit H. Epidemiology experiment and simulation management through schema-based digital libraries. Glasglow, Scotland, September 6-10, 2010; 2010. Proceedings of the 2nd DL.org workshop during the 14th European Conference on Digital Libraries.
Ma D Smith D.P. Zheng Z. & Michalak P. Dissection of sensory components of behavioral isolation between Zimbabwe and Cosmopolitan Drosophila melanogaster. Israel Journal of Ecology and Evolution. 2010;In press.
Macauley M, Mortveit H. Update sequence stability in graph dynamical systems. Discrete and Continuous Dynamical Systems S.. 2010;4:1533–1541.
Mane SP, Dominguez-Bello MG, Blaser MJ, et al. Host-interactive genes in Amerindian Helicobacter pylori diverge from their Old World homologs and mediate inflammatory responses. J Bacteriol. 2010;192:3078–3092. http://www.ncbi.nlm.nih.gov/pubmed/20400544
Mazzei J H. Zhou B. Brayfield R. Hontecillas J. Bassaganya-Riera and E.M. Schmelz. Dietary sphingomyelin suppresses inflammation-driven colorectal cancer. Journal of Nutritional Biochemistry. 2010;In Press.
Mazzei J H. Zhou B. Brayfield R. Hontecillas J. Bassaganya-Riera and E.M. Schmelz. Dietary sphingomyelin suppresses inflammation-driven colorectal cancer. Journal of Nutritional Biochemistry. 2010;In Press.
Mendes Pde P. Framework for Comparative Assessment of Parameter Estimation and Inference Methods in Systems Biology. In: Lawrence ND, Girolami M, Rattray M, Sanguinetti G, eds. Learning and Inference in Computational Systems Biology. Cambridge, MA: MIT Press; 2010:pp. 33–58.
Mendes P, Dada JO, Spasic I, Paton NW. SBRML: a markup language for associating systems biology data with models. Bioinformatics. 2010;26:932–938.
Mohapatra SK, Cole LE, Evans C, et al. Modulation of hepatic PPAR expression during Ft LVS LPS-induced protection from Francisella tularensis LVS infection. BMC Infect Dis. 2010;10:10. http://www.ncbi.nlm.nih.gov/pubmed/20082697
Moreira LM, Almeida NF Jr., Potnis N, et al. Novel insights into the genomic basis of citrus canker based on the genome sequences of two strains of Xanthomonas fuscans subsp. aurantifolii. BMC Genomics. 2010;11:238. http://www.ncbi.nlm.nih.gov/pubmed/20388224
Nsoesie E, Beckman R, Marathe M. Estimation of an epidemic curve during an outbreak: A classification approach. Vancouver, British Columbia, July 31-August 4, 2010; 2010. Proceedings of 2010 Joint Statistical Meeting.
Paweletz CP, Wiener MC, Bondarenko AY, et al. Application of an end-to-end biomarker discovery platform to identify target engagement markers in cerebrospinal fluid by high resolution differential mass spectrometry. J Proteome Res. 2010;9:1392–1401. http://www.ncbi.nlm.nih.gov/pubmed/20095649
Pyysalo S, Ohta T, Cho H, et al. Towards Event Extraction from Full Texts on Infectious Diseases.; 2010. Proceedings of the 2010 Workshop on Biomedical Natural Language Processing.
Reed J, Hasan SMS, Marathe M. Wireless distributed computing: Concept to reality.. 2010.
Rossetti CA, Galindo CL, Everts RE, Lewin HA, Garner HR, Adams LG. Comparative analysis of the early transcriptome of Brucella abortus – Infected monocyte-derived macrophages from cattle naturally resistant or susceptible to brucellosis. Res Vet Sci. 2010. http://www.ncbi.nlm.nih.gov/pubmed/20932540
Sampo Pyysalo TO Han-Cheol Cho Dan Sullivan Chunhong Mao Bruno Sobral Jun. Towards Event Extraction from Full Texts on Infectious Diseases. Association for Computational Linguistics; 2010. Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, ACL 2010. http://www.aclweb.org/anthology/W/W10/W10-1919.pdf
Setubal JC, Moreira LM, Almeida NF, et al. Novel insights into the genomic basis of citrus canker based on the genome sequences of two strains of Xanthomonas fuscans subsp aurantifolii. Bmc Genomics. 2010;11.
Shawky H, Marathe A. Stylistic differences across hedge funds as revealed by historical monthly returns. Technology and Investment. 2010;2:26–34.
Simeonidis E, Smallbone K, Swainston N, Mendes P. Towards a genome-scale kinetic model of cellular metabolism. BMC Syst Biol. 2010;4.
Smallbone K, Dobson PD, Jameson D, et al. Further developments towards a genome-scale metabolic model of yeast. BMC Syst Biol. 2010;4.
Sullivan DE GJLJ Shukla M Sobral B. Data integration for dynamic and sustainable systems biology resources: challenges and lessons learned. Chemistry & Biodiversity. 2010;7:1124–1141.
Sullivan DE, Gabbard JL Jr., Shukla M, Sobral B. Data integration for dynamic and sustainable systems biology resources: challenges and lessons learned. Chem Biodivers. 2010;7:1124–1141. http://www.ncbi.nlm.nih.gov/pubmed/20491070
Swainston N, Golebiewski M, Messiha HL, et al. Enzyme kinetics informatics: from instrument to browser. Febs Journal. 2010;277:3769–3779.
Swainston N, Jameson D, Li P, Spasic I, Mendes P, Paton N. Integrative Information Management for Systems Biology Data Integration in the Life Sciences. In: Lambrix P, Kemp G, eds. Springer Berlin / Heidelberg; 2010:164–178. Lecture Notes in Computer Science 6254. http://dx.doi.org/10.1007%2F978-3-642-15120-0_13
Swarup S. Computing though interaction. Bloomington, Indiana, September 4-7, 2010; 2010. Proceedings of the Third International Workshop on Guided Self-Organization.
Tiller RV, Gee JE, Frace MA, et al. Characterization of novel Brucella strains originating from wild native rodent species in North Queensland, Australia. Appl Environ Microbiol. 2010;76:5837–5845. http://www.ncbi.nlm.nih.gov/pubmed/20639360
Torto-Alalibo T, Collmer C, Gwinn-Giglio M, et al. Unifying themes in microbial associations with animal and plant hosts described using the Gene Ontology. Microbiology and Molecular Biology Reviews; 2010.
Torto-Alalibo T, Collmer CW, Gwinn-Giglio M, et al. Unifying themes in microbial associations with animal and plant hosts described using the Gene Ontology. Microbiol. Molec. Biol. Rev.. 2010;74:in press.
Tucker DM, Maroof MAS, Mideros S, et al. Mapping Quantitative Trait Loci for Partial Resistance to Phytophthora sojae in a Soybean Interspecific Cross. Crop Science. 2010;50:628–635.
Tyler BM. Towards a systems-level understanding of oomycete-plant interactions. Minneapolis: American Phytopathological Society; 2010. Proceedings of the 10th US-Japan seminar: Genome-Enabled Integration of Research in Plant Pathogen S.
Tyler BM, Kale SD. Methods & Compositions to Protect Plants & Animals against Oomycete Pathogen Infection. Usa; 2010.
Tyler BM, Torto-Alalibo T, Collmer CW, et al. Unifying Themes in Microbial Associations with Animal and Plant Hosts Described Using the Gene Ontology. Microbiology and Molecular Biology Reviews. 2010;74:479–503.
Wang C, Kemp J, Da Fonseca IO, et al. Sinorhizobium meliloti 1021 loss-of-function deletion mutation in chvI and its phenotypic characteristics. Mol Plant Microbe Interact. 2010;23:153–160. http://www.ncbi.nlm.nih.gov/pubmed/20064059
Wang H-H, Waller L, Tripathy S, et al. Discovery of genes underlying soybean QTL conferring partial resistance to Phytophthora sojae. Plant Genome. 2010;3:14–22.
Weeks JN, Galindo CL, Drake KL, Adams GL, Garner HR, Ficht TA. Brucella melitensis VjbR and C12-HSL regulons: contributions of the N-dodecanoyl homoserine lactone signaling molecule and LuxR homologue VjbR to gene expression. BMC Microbiol. 2010;10:167. http://www.ncbi.nlm.nih.gov/pubmed/20529360
Yang K, Setubal JC. Homology prediction refinement and reconstruction of gene content and order of ancestral bacterial genomes. Niagara Falls: ACM Digital Libraries; 2010. ACM International Conference on Bioinformatics and Computational Biology 2010.
Zhang H, Setubal JC, Zhan X, et al. Component identification of electron transport chains in curdlan-producing Agrobacterium sp. ATCC 31749 and its genome-specific prediction using comparative genome and phylogenetic trees analysis. J Ind Microbiol Biotechnol. 2010. http://www.ncbi.nlm.nih.gov/pubmed/20730594
Zou F, Huang H, Lee S, Hoeschele I. Nonparametric Bayesian variable selection with applications to multiple quantitative trait loci mapping with epistasis and gene-environment interaction. Genetics. 2010;186(1):385–394. http://www.ncbi.nlm.nih.gov/pubmed/20551445
Almeida NF, Yan S, Lindeberg M, et al. A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000. Mol Plant Microbe Interact. 2009;22:52–62. http://www.ncbi.nlm.nih.gov/pubmed/19061402
Atkins K, Chen J, Kumar A, Marathe A. The structure of electrical networks: A graph theory based analysis. International Journal of Critical Infrastructure. 2009;5:265–284.
Atkins K, Chen J, Kumar A, Marathe A. The structure of electrical networks: A graph theory based analysis. International Journal of Critical Infrastructure. 2009;5:265–284.
Atkins K, Chen J, Kumar AVS, Marathe A. Structure of electrical networks: A graphy theory based analysis. Special Issue of International Journal of Critical Infrastructure. 2009;5:265–284.
Atkins K, Chen J, Kumar AVS, Marathe A. Structure of electrical networks: A graphy theory based analysis. Special Issue of International Journal of Critical Infrastructure. 2009;5:265–284.
Atkins K, Chen J, Kumar VSA, Marathe A. Structure of electrical networks: A graph theory based analysis. International Journal of Accounting, Auditing and Performance Evaluation. 2009;5:265–284.
Baliji S, Cammer SA, Sobral B, Baker SC. Detection of nonstructural protein 6 in murine coronavirus-infected cells and analysis of the transmembrane topology by using bioinformatics and molecular approaches. J Virol. 2009;83:6957–6962. http://www.ncbi.nlm.nih.gov/pubmed/19386712
Barrett C, Bisset K, Leidig J, Marathe A, Marathe M. Estimating the economic impact of public strategies for controlling an epidemic: a multi-agent approach. Pasadena, California; 2009:34–39. Proceedings of 21st Innovative Applications of Artificial Intelligence Conference. www.aaai.org/ocs/index.php/IAAI/IAAI09/paper/download/248/1015
Barrett C, Bisset K, Leidig J, Marathe A, Marathe M. Estimating the economic impact of public strategies for controlling an epidemic: a multi-agent approach. Pasadena, California; 2009:34–39. Proceedings of 21st Innovative Applications of Artificial Intelligence Conference. www.aaai.org/ocs/index.php/IAAI/IAAI09/paper/download/248/1015
Barrett C, Bisset K, Leidig J, Marathe A, Marathe M. Estimating the economic impact of public strategies for controlling an epidemic: a multi-agent approach. Pasadena, California; 2009:34–39. Proceedings of 21st Innovative Applications of Artificial Intelligence Conference. www.aaai.org/ocs/index.php/IAAI/IAAI09/paper/download/248/1015
Barrett C, Bisset K, Leidig J, Marathe A, Marathe M. Estimating the economic impact of public strategies for controlling an epidemic: a multi-agent approach. Pasadena, California; 2009:34–39. Proceedings of 21st Innovative Applications of Artificial Intelligence Conference. www.aaai.org/ocs/index.php/IAAI/IAAI09/paper/download/248/1015
Barrett C, DuBois T, Eubank S, Kumar AVS, Marathe M, Srinivasan A. Sequestering critical workers in event of epidemics. Austin, TX; 2009. ACM-SIAM Symposium on Discrete Algorithms (SODA10).
Barrett C, DuBois T, Eubank S, Kumar AVS, Marathe M, Srinivasan A. Sequestering critical workers in event of epidemics. Austin, TX; 2009. ACM-SIAM Symposium on Discrete Algorithms (SODA10).
Barrett C, DuBois T, Eubank S, Kumar AVS, Marathe M, Srinivasan A. Sequestering critical workers in event of epidemics. Austin, TX; 2009. ACM-SIAM Symposium on Discrete Algorithms (SODA10).
Barrett C, DuBois T, Eubank S, Kumar AVS, Marathe M, Srinivasan A. Sequestering critical workers in event of epidemics. Austin, TX; 2009. ACM-SIAM Symposium on Discrete Algorithms (SODA10).
Barrett C, Eubank S, Marathe M. Policy informatics for co-evolving socio-technical networks. Linkoping, Sweden; 2009. Proceedings of 4th International Conference on Critical Infrastructures.
Barrett C, Eubank S, Marathe M. Policy informatics for co-evolving socio-technical networks. Linkoping, Sweden; 2009. Proceedings of 4th International Conference on Critical Infrastructures.
Barrett C, Eubank S, Marathe M. Policy informatics for co-evolving socio-technical networks. Linkoping, Sweden; 2009. Proceedings of 4th International Conference on Critical Infrastructures.
Barrett C, Lewis B, Chen J, et al. Interactions among human behavior, social networks, and societal infrastructures: A case study in computational epidemiology. In: Ravi S, Shukla S, eds. Fundamental Problems in Computing: Essays in Honor of Professor Daniel J. Rosenkrantz. Vol. Xxii. Springer Verlag; 2009:479–507. http://www.springer.com/computer/swe/book/978-1-4020-9687-7
Barrett C, Lewis B, Chen J, et al. Interactions among human behavior, social networks, and societal infrastructures: A case study in computational epidemiology. In: Ravi S, Shukla S, eds. Fundamental Problems in Computing: Essays in Honor of Professor Daniel J. Rosenkrantz. Vol. Xxii. Springer Verlag; 2009:479–507. http://www.springer.com/computer/swe/book/978-1-4020-9687-7
Barrett C, Lewis B, Chen J, et al. Interactions among human behavior, social networks, and societal infrastructures: A case study in computational epidemiology. In: Ravi S, Shukla S, eds. Fundamental Problems in Computing: Essays in Honor of Professor Daniel J. Rosenkrantz. Vol. Xxii. Springer Verlag; 2009:479–507. http://www.springer.com/computer/swe/book/978-1-4020-9687-7
Barrett C, Lewis B, Chen J, et al. Interactions among human behavior, social networks, and societal infrastructures: A case study in computational epidemiology. In: Ravi S, Shukla S, eds. Fundamental Problems in Computing: Essays in Honor of Professor Daniel J. Rosenkrantz. Vol. Xxii. Springer Verlag; 2009:479–507. http://www.springer.com/computer/swe/book/978-1-4020-9687-7
Bassaganya-Riera J Sanchez S. de Horna A. Duran E. Orpi M. Ferrer G. Casagran O. Hontecillas R. F4/80hiCCR2hi macrophage infiltration into the intra-abdominal fat worsens the severity of IBD in obese mice with DSS colitis. e-SPEN Journal. 2009;4:90–97.
Beare PA, Unsworth N, Andoh M, et al. Comparative genomics reveal extensive transposon-mediated genomic plasticity and diversity among potential effector proteins within the genus Coxiella. Infect Immun. 2009;77:642–656. http://www.ncbi.nlm.nih.gov/pubmed/19047403
Bisset K, Barrett C, Leidig J, Marathe A, Marathe M. Estimating the impact of public and private strategies for controlling and Epidemic: A multi-agent approach. Pasadena, California; 2009:34–39. Proceedings of the Twenty-First Innovative Applications of Artificial Intelligence Conference. http://www.aaai.org/ocs/index.php/IAAI/IAAI09/paper/viewFile/248/1015
Bisset K, Barrett C, Leidig J, Marathe A, Marathe M. Estimating the impact of public and private strategies for controlling and Epidemic: A multi-agent approach. Pasadena, California; 2009:34–39. Proceedings of the Twenty-First Innovative Applications of Artificial Intelligence Conference. http://www.aaai.org/ocs/index.php/IAAI/IAAI09/paper/viewFile/248/1015
Bisset K, Barrett C, Leidig J, Marathe A, Marathe M. Estimating the impact of public and private strategies for controlling and Epidemic: A multi-agent approach. Pasadena, California; 2009:34–39. Proceedings of the Twenty-First Innovative Applications of Artificial Intelligence Conference. http://www.aaai.org/ocs/index.php/IAAI/IAAI09/paper/viewFile/248/1015
Bisset K, Barrett C, Leidig J, Marathe A, Marathe M. Estimating the impact of public and private strategies for controlling and Epidemic: A multi-agent approach. Pasadena, California; 2009:34–39. Proceedings of the Twenty-First Innovative Applications of Artificial Intelligence Conference. http://www.aaai.org/ocs/index.php/IAAI/IAAI09/paper/viewFile/248/1015
Bisset K, Feng X, Yardi S, Marathe M. Modeling interaction between individuals, social networks, and public policy to support public health epidemiology. In: Rossetti MD, Hill RR, Johansson B, Dunkin A, Ingalls RG, eds. Austin, Texas; 2009:2020–2031. Proceedings of the 2009 Winter Simulation Conference. http://www.informs-sim.org/wsc09papers/194.pdf
Bisset K, Feng X, Yardi S, Marathe M. Modeling interaction between individuals, social networks, and public policy to support public health epidemiology. In: Rossetti MD, Hill RR, Johansson B, Dunkin A, Ingalls RG, eds. Austin, Texas; 2009:2020–2031. Proceedings of the 2009 Winter Simulation Conference. http://www.informs-sim.org/wsc09papers/194.pdf
Boakye DA, Adasi K, Appawu M, Brown CA, Wilson MD. Patterns of household insecticide use and pyrethroid resistance in Anopheles gambiae sensu stricto (Diptera:Culicidae) within the Accra metropolis of Ghana. Africian Entomology. 2009;17:125–130.
Case CL, Rodriguez J, Mukhopadhyay B. Characterization of a NADH oxidase of the flavin-Dependent disulfide reductase family from Methanocaldococcus jannaschii. Microbiology. 2009;155:69–79.
Channakeshava K, Chafekar D, Bisset K, Kumar VSA, Marathe M. EpiNet: A simulation framework to study the spread of malware in wireless networks. Rome, Italy, March 2-6, 2009; 2009. Proceeding of 2nd International Conference on Simulation Tools and Techniques (SIMUTools '09). http://portal.acm.org/citation.cfm?id=1537622
Channakeshava K, Chafekar D, Bisset K, Kumar VSA, Marathe M. EpiNet: A simulation framework to study the spread of malware in wireless networks. Rome, Italy, March 2-6, 2009; 2009. Proceeding of 2nd International Conference on Simulation Tools and Techniques (SIMUTools '09). http://portal.acm.org/citation.cfm?id=1537622
Channakeshava K, Chafekar D, Bisset K, Kumar VSA, Marathe M. EpiNet: A simulation framework to study the spread of malware in wireless networks. Rome, Italy, March 2-6, 2009; 2009. Proceeding of 2nd International Conference on Simulation Tools and Techniques (SIMUTools '09). http://portal.acm.org/citation.cfm?id=1537622
Channakeshava K, Kumar AVS, Marathe M. Strategies for controlling mobile epidemics: insights from using realistic mobile networks. Chicago, IL; 2009. 16th ACM Conference on Computer and Communications Security 2009.
Channakeshava K, Kumar AVS, Marathe M. Strategies for controlling mobile epidemics: insights from using realistic mobile networks. Chicago, IL; 2009. 16th ACM Conference on Computer and Communications Security 2009.
Dada J, Mendes P. Design and Architecture of Web Services for Simulation of Biochemical Systems Data Integration in the Life Sciences. In: Paton N, Missier P, Hedeler C, eds. Springer Berlin / Heidelberg; 2009:182–195. Lecture Notes in Computer Science 5647. http://dx.doi.org/10.1007%2F978-3-642-02879-3_15
Dias-Neto E, Nunes DN, Giordano RJ, et al. Next-generation phage display: integrating and comparing available molecular tools to enable cost-effective high-throughput analysis. PLoS One. 2009;4:e8338. http://www.ncbi.nlm.nih.gov/pubmed/20020040
Dickman MB, Lawrence CB, J van K. Necrotrophic fungi: Live and let die. In: Cellular and Molecular Biology of Filamentous Fungi. ASM Press; 2009:In press.
Fagyal Z, Swarup S, Escobar A, Gasser L, Lakkaraju K. Centers, peripheries, and popularity: The emergence of norms in simulated networks of linguistic influence. Penn Working Papers in Linguistics. 2009;15:Selected Papers from NWAV 27, 2009.
Fagyal Z, Swarup S, Escobar AM, Gasser L, Lakkaraju K. The emergence of norms in simulated networks of linguistic influenza.; 2009. Penn Working Papers in Linguistics 15 (2).
Feighner BH, Eubank S, Glass RJ, Davey VJ, Chretien J-P, JC G. Infectious disease modeling and military readiness [conference summary}. Emerging Infectious Diseases. 2009;15.
Garner 180. HR. Global Microsatellite Survey: discovery of a polymorphic AAAG repeat in Estrogen Related Receptor g gene that may correlate with heritable cancers. Center FHC, ed. Seattle; 2009.
Garner HR. Universal Applications and Data Challenges DTRA/NSF, ed.; 2009.
Garner HR. Whole-genome microsatellite scans of primates are revealing of neurological genes. Meeting T in PG, ed. Breckenridge; 2009.
Garner HR. A Study of Highly Similar and Duplicate Citations via Computer-based Text Mining and Manual Verification. Conference HHSO of RIA, ed. Buffalo; 2009.
Garner HR. Medical Technology Overview. Agency DTR, ed. Washington, DC; 2009.
Garner HR. Quantitative ImmunoFluorescence enabled by highly multiplexed hyperspectral imaging microscopy, custom reagents and advanced software. Pathology AS for I, ed. New Orleans; 2009.
Garner HR. Foreign Animal Zoonotic Disease Center. Array UBDAUB-SD, ed. College Station; 2009.
Garner HR. Characterizing Publication Integrity. Center FHC, ed. Seattle; 2009.
Garner HR. Universal Applications and Data Challenges DTRA/NSF, ed.; 2009.
Garner H. Biotech 101. Chemists AM of C, ed. Dallas; 2009.
Garner H. Driving oncology services business with text data mining. Oncology US, ed. Ft. Worth; 2009.
H.R.Garner. Identifying Relations in Text: Applications to Generating and Verifying Hypotheses in Drug Discovery. Keynote speaker IC on BO, ed. Buffalo, NY; 2009.
H.R.Garner. Trail to Invention. (UT) S of WE, ed. Dallas; 2009.
Han B, Kumar VSA, Marathe M, Parthasarathy S, Srinivasan A. Distributed strategies for channel allocation and scheduling in software-defined radio networks. Rio de Janeiro, Brazil; 2009:1521–1529. Proceedings of the 28th Conference on Computer Communication (INFOCOM). http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=5062069
Han B, Kumar VSA, Marathe M, Parthasarathy S, Srinivasan A. Distributed strategies for channel allocation and scheduling in software-defined radio networks. Rio de Janeiro, Brazil; 2009:1521–1529. Proceedings of the 28th Conference on Computer Communication (INFOCOM). http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=5062069
Harold R. Garner AJ Michael L. Huebschman Surya Shandy Sandhya N. Mitnala Brandi Wallek Season Wong. Dynamic high-resolution patterning for biomedical, materials, and semiconductor research. SPIE Bios09. 2009;#7210-1.
Harold R. Garner AJ Michael L. Huebschman Surya Shandy Sandhya N. Mitnala Brandi Wallek Season Wong. Dynamic high-resolution patterning for biomedical, materials, and semiconductor research. SPIE Bios09. 2009;#7210-1.
Hower V, Mendes P, Torti FM, et al. A general map of iron metabolism and tissue-specific subnetworks. Molecular Biosystems. 2009;5:422–443.
Hower V, Mendes P, Torti FM, et al. A general map of iron metabolism and tissue-specific subnetworks. Molecular Biosystems. 2009;5:422–443.
Huang F, Ravindran B, Vullikanti A. An approximation algorithm for minimum-delay peer-to-peer streaming. Seattle, Washington; 2009. Ninth International Conference on Peer-to-Peer Computing (P2P 2009).
Kale SD, Tyler BM. Cell-entry motifs of effectors from three eukaryotic kingdoms bind a common receptor family. Blacksburg, VA; 2009. Genetics, Bioinformatics, Computational Biology Seminar.
Kale SD, Tyler BM. Characterization of Protein translocation Domains from Oomycetes, Plasmodium, and Fungal Plant Pathogens. Blacksburg, VA; 2009. VBI Research Club.
Kale SD, Tyler BM. Assaying effector function in planta using double-barreled particle bombardment. In: McDowell JM, ed. Methods in Molecular Biology. The Plant Immune Response. Totowa, NJ: Humana; 2009:in press.
Khan M, Kumar VSA, Marathe M, Pandurangan G, Ravi SS. Bi-Criteria approximation algorithms for power-efficient and low-interference topology control in unreliable ad hoc networks. Rio De Janeiro, Brazil; 2009:370–378. Proceedings of the 28th Conference on Computer Communications. http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=5061941&tag=1
Khan M, Kumar VSA, Marathe M, Pandurangan G, Ravi SS. Bi-Criteria approximation algorithms for power-efficient and low-interference topology control in unreliable ad hoc networks. Rio De Janeiro, Brazil; 2009:370–378. Proceedings of the 28th Conference on Computer Communications. http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=5061941&tag=1
Kjer KM, Roshan U, Gillespie JJ. Structural and evolutionary considerations for multiple sequence alignment of RNA, and the challenges for algorithms that ignore them. In: Rosenberg MS, ed. Sequence Alignment: Methods, Models, Concepts, and Strategies. University of California Press; 2009:105–149.
Krishnan A, Ambavaram MMR, Harb A, Batlang U, Wittich PE, Pereira A. Genetic networks underlying plant abiotic stress responses. In: Jenks MA, Wood AJ, eds. Genes For Plant Abiotic Stress. Aimes, IA: John wiley & Sons, Inc.; 2009:In press.
Krishnan A, Guiderdoni E, An G, et al. Mutant Resources in Rice for Functional Genomics of the Grasses. Plant Physiol.. 2009;149:165–170. http://www.plantphysiol.org
Kumar A, Macauley M, Mortveit H. Limit set reachability in asynchronous graph dynamical systems, Lecture Notes in Computer Science. In: Reachability Problems. Vol. 5797:217-232. Springer Berlin Heidelberg; 2009. http://www.springerlink.com/content/t497v3644155p15q/
Lakkaraju K, Swarup S, Gasser L. Consensus under constraints: Modeling the great English vowel shift. Pasadena, CA; 2009. The Workshop Social Simulation in conjunction with IJACI '09.
Lakkaraju K, Swarup S, Gasser L. Consensus under constraints: Modeling the great English vowel shift. In: The Workshop Social Simulation in conjunction with IJACI '09. Pasadena, California; 2009.
Laubenbacher R. Thoughts from SIAM. SIAM News. 2009;42:12.
Laubenbacher R, Jarrah AS. Algebraic Models of Biochemical Networks. Methods in Enzymology: Computer Methods, Part B. 2009;467:163–+.
Lazar IM. Microfluidics bioanalytical platforms with mass spectrometry detection for biomarker discovery and screening. In: Le Gac S, van den Berg A, eds. Miniaturization and Mass Spectrometry. Royal Society of Chemistry; 2009:151–172.
Liu B, Hoeschele I, de la Fuente A. Inferring gene regulatory networks from genetical genomics data. In: Das S, Caragea D, Hsu WH, Welsh SM, eds. Computational methodologies in gene regulatory networks. IGI Global; 2009:In press.
Marathe M. Decision and policy informatics for large co-evolving socio-technical networks. Likoping, Sweden, April 28-30.; 2009. Fourth International CRIS conference on Critical Infrastructures. http://ndssl.vbi.vt.edu/Publications/09-040.pdf
Marathe M. Co-Evolving networks and social cognition.; 2009. Army Research Lab.
Marathe M. Co-Evolving Complex Networks: Epidemics in social and wireless networks. Argonne, IL, September 28.; 2009. Argonne National Laboratory.
Marsch-Martinez N, Pereira A. Activation tagging for gain-in-function mutants. In: Pua EC, Davey MR, eds. Plant Developmental Biology – Biotechnological Perspectives. Vol. 1. Berlin, Germany: Springer Publishing Company; 2009:In press.
Marvaldi AE, Duckett CN, Kjer KM, Gillespie JJ. Structural alignment of 18S and 28S rDNA sequences provides insights into the phylogeny of Phytophaga and related beetles (Coleoptera: Cucujiformia). Zoologica Scripta. 2009;38:63–77.
Matsuwaki Y, Wada K, White TA, et al. Recognition of fungal protease activities induces cellular activation and eosinophil-derived neurotoxin release in human eosinophils. Journal of Immunology. 2009:In press.
McGarvey PB, Huang H, Mazumder R, et al. Systems integration of biodefense omics data for analysis of pathogen-host interactions and identification of potential targets. PLoS One. 2009;4:e7162. http://www.ncbi.nlm.nih.gov/pubmed/19779614
Mendes P, Hoops S, Sahle S, Gauges R, Dada J, Kummer U. Computational modeling of biochemical networks using COPASI. Methods in Molecular Biology. 2009;500:17–59.
Michael L. Huebschman KPR and Harold R. Garner. Hyperspectral microscopy imaging to analyze pathology samples with multi-colors reduces time and cost. SPIE Bios09. 2009;#7182-50.
Michael L. Huebschman KPR and Harold R. Garner. Hyperspectral microscopy imaging to analyze pathology samples with multi-colors reduces time and cost. SPIE Bios09. 2009;#7182-50.
Miller D J A and Garner HR. Cells have high resolution light sensing capability that can be used to control aspects of their behavior. IEEE Engineering in Biology and Medicine. 2009;January/February.
Miller D J A and Garner HR. Cells have high resolution light sensing capability that can be used to control aspects of their behavior. IEEE Engineering in Biology and Medicine. 2009;January/February.
Purwantini E, Mukhopadhyay B. Conversion of NO2 to NO by reduced coenzyme F420 protects mycobacteria from nitrosative damage. Proc Natl Acad Sci U S A. 2009;106:6333–6338. http://www.ncbi.nlm.nih.gov/pubmed/19325122
Purwantini E, Mukhopadhyay B. Conversion of NO2 to NO by reduced coenzyme F420 protects mycobacteria from nitrosative damage. Proc Natl Acad Sci U S A. 2009;106(15):6333–6338. http://dx.doi.org/10.1073%2Fpnas.0812883106
Qutob D, Tedman-Jones J, Dong S, et al. Copy number variation and transcriptional polymorphisms of Phytophthora sojae RXLR effector genes Avr1a and Avr3a. PLoS One. 2009;4(4):e5066. http://www.ncbi.nlm.nih.gov/pubmed/19343173
Robeva R, Laubenbacher R. Mathematical Biology Education: Beyond Calculus. Science. 2009;325:542–543.
Sassano G Sanderson P. Franx J. Groot J. van Straalen J. Bassaganya-Riera J. Analysis of pomegranate seed oil for the presence of jacaric acid. Journal of the Science of Food and Agriculture. 2009;6:1046–1052.
Setubal JC, dos Santos P, Goldman BS, et al. Genome sequence of Azotobacter vinelandii, an obligate aerobe specialized to support diverse anaerobic metabolic processes. J Bacteriol. 2009;191:4534–4545. http://www.ncbi.nlm.nih.gov/pubmed/19429624
Setubal JC, Wood D, Burr T, et al. The Genomics of Agrobacterium: Insights into Pathogenicity, Biocontrol, and Evolution. In: Jackson RW, ed. Plant Pathogenic Bacteria: Genomics and Molecular Biology. Horizon Press; 2009:91–112. http://www.horizonpress.com/ppb
Slater SC, Goldman BS, Goodner B, et al. Genome sequences of three agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria. J Bacteriol. 2009;191:2501–2511. http://www.ncbi.nlm.nih.gov/pubmed/19251847
Swarup S. The classification game:complexity regularization through interaction. Pasadena, CA; 2009. 21st International Joint Conference on Artificial Intelligence.
Swarup S. The classification game: Complexity regularization through interaction. In: Proceedings of the Eighth workshop on Coordination, Organization, Institutions and Norms in Agent Systems (COIN) held in conjunction with IJCAI'09. Pasadena, California; 2009.
Tyler BM. Ch. 18 Effectors. In: Lamour K, Kamoun S, eds. Oomycete Genetics and Genomics: Diversity, Interactions and Research Tools. Hoboken, New Jersey: Wiley-Blackwell; 2009:361–385.
Tyler BM, Sanchez C(eds). Special issue: Gene Ontology for Microbiologists. Trends Microbiol.. 2009;17:259–336.
Wattam AR, Williams KP, Snyder EE, et al. Analysis of Ten Brucella Genomes Reveals Evidence for Horizontal Gene Transfer Despite a Preferred Intracellular Lifestyle. J. Bacteriol.. 2009;191:3569–3579. http://jb.asm.org/cgi/content/abstract/191/11/3569
Wattam AR, Williams KP, Snyder EE, et al. Analysis of ten Brucella genomes reveals evidence for horizontal gene transfer despite a preferred intracellular lifestyle. J Bacteriol. 2009;191:3569–3579. http://www.ncbi.nlm.nih.gov/pubmed/19346311
Wattam AR, Williams KP, Snyder EE, et al. Analysis of ten Brucella genomes reveals evidence for horizontal gene transfer despite a preferred intracellular lifestyle. J Bacteriol. 2009;191:3569–3579. http://www.ncbi.nlm.nih.gov/pubmed/19346311
Wight W, Kim K-H, Lawrence CB, Walton JD. Biosynthesis and role in virulence of the histone deacetylase inhibitor depudecin from Alternaria brassicicola. Molecular Plant Microbe Interactions. 2009:In press.
Abhyankar MM, Hochreiter AE, Hershey J, et al. Characterization of an Entamoeba histolytica high-mobility-group box protein induced during intestinal infection. Eukaryot Cell. 2008;7:1565–1572. http://www.ncbi.nlm.nih.gov/pubmed/18658254
Adasi K, Barrett CL, Eubank S, et al. A Review of malaria modeling.. 2008.
Adasi K, Barrett CL, Eubank S, et al. A Review of malaria modeling.. 2008.
Adasi K, Barrett CL, Eubank S, et al. A Review of malaria modeling.. 2008.
Adasi K, Barrett CL, Eubank S, et al. A Review of malaria modeling.. 2008.
Adasi K, Barrett CL, Eubank S, et al. A Review of malaria modeling.. 2008.
Adasi K, Hemingway J. Susceptibility to three pyrthroids and detection of knockdown resistance mutation in Ghanaian Anophles gambiae sensu stricto. Journal of Vector Ecology. 2008;33:255–262.
Azad A, Beier MS, Gillespie JJ. The Rickettsiaceae. In: Goldman LG and E, ed. Practical Handbook of Microbiology. CRC Press; 2008:439–450.
Bao L, Hoeschele I. Quality Assessment for Short Oligonucleotide Microarray Data. Comment. Technometrics. 2008;50:268–270.
Barrett C. HPC-based policy informatics: A public health epidemiology example. Miami, FL; 2008. Inivted Presentation at High Performance Computational Biology (HICOMB) 2008.
Barrett C, Bisset K, Eubank S, Feng X, Marathe M. EpiSimdemics: an efficient and scalable framework for simulating the spread of infectious disease on large social networks. Austin, Texas, November 15-21.; 2008. Proceedings of SuperComputing 08 International Conference for High Performance Computing, Networking. http://portal.acm.org/citation.cfm?id=1413370.1413408
Barrett C, Bisset K, Eubank S, Feng X, Marathe M. EpiSimdemics: an efficient and scalable framework for simulating the spread of infectious disease on large social networks. Austin, Texas, November 15-21.; 2008. Proceedings of SuperComputing 08 International Conference for High Performance Computing, Networking. http://portal.acm.org/citation.cfm?id=1413370.1413408
Barrett C, Bisset K, Eubank S, Feng X, Marathe M. EpiSimdemics: an efficient and scalable framework for simulating the spread of infectious disease on large social networks. Austin, Texas, November 15-21.; 2008. Proceedings of SuperComputing 08 International Conference for High Performance Computing, Networking. http://portal.acm.org/citation.cfm?id=1413370.1413408
Barrett C, Bisset K, Eubank S, Feng X, Marathe M. EpiSimdemics: an efficient and scalable framework for simulating the spread of infectious disease on large social networks. Austin, Texas, November 15-21.; 2008. Proceedings of SuperComputing 08 International Conference for High Performance Computing, Networking. http://portal.acm.org/citation.cfm?id=1413370.1413408
Barrett C, Bisset K, Konjevod G, Marathe M, Wagner D. Engineering label-constrained shortest-path algorithms. LNCS. Springer; 2008:27–37. Proceedings of the Fourth International Conference on Algorithmic Aspects in Information and Managem.
Barrett C, Bisset K, Konjevod G, Marathe M, Wagner D. Engineering label-constrained shortest-path algorithms. LNCS. Springer; 2008:27–37. Proceedings of the Fourth International Conference on Algorithmic Aspects in Information and Managem.
Barrett C, Bisset K, Konjevod G, Marathe M, Wagner D. Engineering label-constrained shortest-path algorithms. LNCS. Springer; 2008:27–37. Proceedings of the Fourth International Conference on Algorithmic Aspects in Information and Managem.
Barrett C, Eubank S, Marathe M. An interaction-based approach to computational epidemiology. Chicago, IL: AAAI Press; 2008:1590–1593. Proceedings of 23rd Association for the Advancement of Artificial Intelligence 3. http://www.aaai.org/Papers/AAAI/2008/AAAI08-269.pdf
Barrett C, Eubank S, Marathe M. An interaction-based approach to computational epidemiology. Chicago, IL: AAAI Press; 2008:1590–1593. Proceedings of 23rd Association for the Advancement of Artificial Intelligence 3. http://www.aaai.org/Papers/AAAI/2008/AAAI08-269.pdf
Barrett C, Eubank S, Marathe M. An interaction-based approach to computational epidemiology. Chicago, IL: AAAI Press; 2008:1590–1593. Proceedings of 23rd Association for the Advancement of Artificial Intelligence 3. http://www.aaai.org/Papers/AAAI/2008/AAAI08-269.pdf
Barrett CL, Beckman R, Bisset K, et al. Investigating the role of public policies and individual behavior on epidemics: a multi-agent systems approach. Chicago, Illinois; 2008. Proceedings of Association for the Advancement of Artificial Intelligence.
Barrett CL, Beckman R, Bisset K, et al. Investigating the role of public policies and individual behavior on epidemics: a multi-agent systems approach. Chicago, Illinois; 2008. Proceedings of Association for the Advancement of Artificial Intelligence.
Barrett CL, Beckman R, Bisset K, et al. Investigating the role of public policies and individual behavior on epidemics: a multi-agent systems approach. Chicago, Illinois; 2008. Proceedings of Association for the Advancement of Artificial Intelligence.
Barrett CL, Beckman R, Bisset K, et al. Investigating the role of public policies and individual behavior on epidemics: a multi-agent systems approach. Chicago, Illinois; 2008. Proceedings of Association for the Advancement of Artificial Intelligence.
Barrett CL, Beckman R, Bisset K, et al. Investigating the role of public policies and individual behavior on epidemics: a multi-agent systems approach. Chicago, Illinois; 2008. Proceedings of Association for the Advancement of Artificial Intelligence.
Barrett CL, Beckman R, Bisset K, et al. Investigating the role of public policies and individual behavior on epidemics: a multi-agent systems approach. Chicago, Illinois; 2008. Proceedings of Association for the Advancement of Artificial Intelligence.
Chafekar D, Kumar A, Marathe M, Parthasarathy S, Srinivasan A. Approximation Algorithms for Computing Capacity of Wireless Networks with SINR Constraints. Phoenix, Arizona; 2008:1166–1174. Proceedings of the 27th IEEE International Conference on Computer Communications (INFOCOM). http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=4509767
Chafekar D, Kumar A, Marathe M, Parthasarathy S, Srinivasan A. Approximation Algorithms for Computing Capacity of Wireless Networks with SINR Constraints. Phoenix, Arizona; 2008:1166–1174. Proceedings of the 27th IEEE International Conference on Computer Communications (INFOCOM). http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=4509767
Choi V, Huang Y, Lam V, Potter D, Laubenbacher R, Duca K. Using formal concept analysis for microarray data comparison. Journal of Bioinformatics and Computational Biology. 2008;6:65–75.
Choi Y, Khan M, Kumar AVS, Pandurangan G. Energy-optimal distributed algorithms for Euclidean minimum spanning trees. Munich, Germany; 2008. 20th ACM Symposium on Parallelism in Algorithms and Architectures.
Choi Y, Khan M, Kumar AVS, Pandurangan G. Energy-optimal distributed algorithms for minimum spanning trees. Munich, Germany: Acm; 2008. Proceedings of the twentieth annual symposium on Parallelism in algorithms and architectures.
Crasta OR, Folkerts O, Fei Z, et al. Genome sequence of Brucella abortus vaccine strain S19 compared to virulent strains yields candidate virulence genes. PLoS One. 2008;3:e2193. http://www.ncbi.nlm.nih.gov/pubmed/18478107
Dou D, Kale SD, Wang X, et al. Conserved C-terminal motifs required for avirulence and suppression of cell death by Phytophthora sojae effector Avr1b. Plant Cell. 2008;20(4):1118–1133. http://www.ncbi.nlm.nih.gov/pubmed/18390593
Dou D, Kale SD, Wang X, et al. RXLR-mediated entry of Phytophthora sojae effector Avr1b into soybean cells does not require pathogen-encoded machinery. Plant Cell. 2008;20(7):1930–1947. http://www.ncbi.nlm.nih.gov/pubmed/18621946
Garner 195. HR. Microsatellite Genomics and Plagarism and multiple manuscript publication. Conference PG, ed. St. Petersburg, Russia; 2008.
Garner HR. Applied computational biology: Some examples and a promising future. Department UNCG, ed.; 2008.
Garner HR. Dynamic high resolution patterning for biomedical, materials and semiconductor research. Texas Instruments MEMSS, ed. Dallas; 2008.
Garner HR. Translating Genomic Research into Medical Applications. Conference BE, ed.; 2008.
Gillespie JJ, Tallamy DW, Riley EG, Cognato AI. Molecular phylogeny of rootworms and related galerucine beetles (Coleoptera: Chrysomelidae). Zoologica Scripta. 2008;37:195–222.
Halloran ME, Ferguson NM, Eubank S, et al. Modeling targeted layered containment of an influenza pandemic in the United States. Proceedings of the National Academy of Sciences (PNAS). 2008;105:4639–4644. http://www.pnas.org/content/105/12/4639.abstract
Halloran ME, Ferguson NM, Eubank S, et al. Modeling targeted layered containment of an influenza pandemic in the United States. Proceedings of the National Academy of Sciences (PNAS). 2008;105:4639–4644. http://www.pnas.org/content/105/12/4639.abstract
Halloran ME, Ferguson NM, Eubank S, et al. Modeling targeted layered containment of an influenza pandemic in the United States. Proceedings of the National Academy of Sciences (PNAS). 2008;105:4639–4644. http://www.pnas.org/content/105/12/4639.abstract
Hucka M, Hoops S, Keating SM, Le Nov. Systems Biology Markup Language (SBML) Level 2: Structures and Facilities for Model Definitions. Nature Precedings. 2008.
Hucka M, Hoops S, Mendes P. Systems Biology Markup Language (SBML) Level 2: Structures and Facilities for Model Definitions. Nature Precedings. 2008.
Jordal B, Gillespie JJ, Cognato AI. Secondary structure alignment and direct optimization of 28S rDNA sequences provide limited phylogenetic resolution in bark and ambrosia beetles (Curculionidae: Scolytinae). Zoologica Scripta. 2008;37:43–56.
Kale SD, Dou D, Tyler BM. Avr1b: From Pathogen-Host Interactions to Innate Immunity. Blacksburg, VA; 2008. Genetics, Bioinformatics, Computational Biology Seminar.
Kale SD, Dou D, Wang X, et al. Conserved C-terminal motifs required for avirulence and suppression of cell death by Phytophthora sojae effector Avr1b. Scotland; 2008. Oomycetes Molecular Genetics Network Meeting.
Kumar VSA, Marathe M, Parthasarathy S, Srinivasan A. Minimum weighted completion time. In: Kao M, ed. Encyclopedia of Algorithms. Vol. 12. Springer Verlag; 2008:1–99.
Kumar VSA, Marathe M, Parthasarathy S, Srinivasan A. Minimum weighted completion time. In: Kao M, ed. Encyclopedia of Algorithms. Vol. 12. Springer Verlag; 2008:1–99.
Laubenbacher RC, Jarrah AS, Mortveit HS, Ravi SS. A mathematical formalism for agent based modeling. In: Meyers RA, ed. Encyclopedia of Complexity and System Science. Vol. In Press. Springer Verlag; 2008. http://arxiv.org/abs/0801.0249
Lawrence CB, Mitchell TK, Craven KD, Cho Y, Cramer RAJ, Kim K-H. At Death's Door: Alternaria Pathogenicity Mechanisms. The Plant Pathology Journal. 2008;24:101–111.
Lee AY, Paweletz CP, Pollock RM, et al. Quantitative Analysis of Histone Deacetylase-1 Selective Histone Modifications by Differential Mass Spectrometry. J Proteome Res. 2008. http://www.ncbi.nlm.nih.gov/pubmed/18973354
Licona PV, Laubenbacher R. Inference of ecological interaction networks. Annales Zoologici Fennici. 2008;45:459–464.
Macauley M, McCammond J, Mortveit HS. Order independence in asynchronous cellular automata. Journal of Cellular Automata. 2008;3:37–56. http://arxiv.org/abs/0707.2360
Macauley M, Mortveit HS. Equivalences on acyclic orientations. Discrete Mathematics. 2008.
Martins A, Vera-Licona P, Laubenbacher R. Model your genes the mathematical way: a mathematical biology workshop for secondary school teachers. Teaching Mathematics and its Applications. 2008;27:91–101.
Purkayastha A, Crasta OR, Eckart JD, et al. Bioinformatics resources for the study of viruses at the Virginia Bioinformatics Institute. In: Cheng RH, Miyamura T, eds. Structure-based Study of Virus Infection. Stockholm, Sweden: World Scientific Publishing Company; 2008.
http://isbn.nu/981-270-405-1
Rajasekaran P, Seleem MN, Contreras A, et al. Brucella abortus strain RB51 leucine auxotroph as an environmentally safe vaccine for plasmid maintenance and antigen overexpression. Appl Environ Microbiol. 2008;74:7051–7055. http://www.ncbi.nlm.nih.gov/pubmed/18836016
Romanovski VG, Jarrah AS, Laubenbacher R. The cyclicity problem for two-dimensional polynomial systems. Differential Equations and Control Processes. 2008:In press.
Sahle S, Mendes P, Hoops S, Kummer U. A new strategy for assessing sensitivities in biochemical models. Philosophical Transactions of the Royal Society A: Physical, Mathematical and Engineering Sciences. 2008;366:3619–3363.
Slater S, Goodner B, Setubal J, Goldman B, Wood D, Nester E. The Agrobacterium tumefaciens C58 genome. In: Tzfira T, Citovsky V, eds. Agrobacterium. New York: Springer; 2008.
Swarup S. Cause and effect: The anticipatory drive and the principle of least time (Commentary). Constructivist Foundations. 2008;4:21–23.
Tao L, Kiefer SE, Xie D, Bryson JW, Hefta SA, Doyle ML. Time-resolved limited proteolysis of mitogen-activated protein kinase-activated protein kinase-2 determined by LC/MS only. J Am Soc Mass Spectrom. 2008;19(6):841–854. http://www.ncbi.nlm.nih.gov/pubmed/18400511
Thakare K Shi W. Barbeau W.E. Bassaganya-Riera J. Hontecillas R. Investigation of colorform-methanol soluble wheat proteins and sphingolipids as potential dietary triggers of diabetes in BBdp rats. Food and Agricultural Immunology. 2008;19:25–48.
Tyler BM. Genomics of Fungal- and Oomycete-Soybean Interactions. In: Stacey G, ed. Soybean Genomics. New York: Springer; 2008:243–267.
Tyler BM, Dou D, Kale SD, et al. The effector repertoire of Phytophthora sojae: structure, function and evolution. In: Lorito M, Woo S, Scala F, eds. Biology of Molecular Plant-Microbe Interactions. Vol. 6. St. Paul, Minnesota: International Society for Molecular Plant-Microbe Interactions; 2008.
Tyler BM, Dou D, Kale SD, et al. The effector repertoire of Phytophthora sojae: structure, function and evolution. In: Lorito M, Woo S, Scala F, eds. Biology of Molecular Plant-Microbe Interactions. Vol. 6. St. Paul, Minnesota: International Society for Molecular Plant-Microbe Interactions; 2008.
Tyler BM, Jiang RHY, Zhou L, et al. Functional genomics and bioinformatics of the Phytophthora sojae-soybean interaction. In: Gustafson P, Stacey G, Taylor J, eds. The Genomics of Disease. New York: Kluwer Academic/Plenum Publisher; 2008:67–78.
Tyler BM, Kale SD, Gu B, Antignani V. Methods and Compositions to Protect Plants and Animals against Pathogen Infection by Blocking Entry of Virulence Proteins. Vol. Serial No. 61/128,080. Usa; 2008.
Weil MR GC and Garner H. A high resolution survey of the effects of 5 Aza dC treatment on the chromatin state of MCF7 breast cancer cells. IEEE Eng Med Biol Mag.. 2008;July-August 2008:86–100.
Weil MR GC and Garner H. A high resolution survey of the effects of 5 Aza dC treatment on the chromatin state of MCF7 breast cancer cells. IEEE Eng Med Biol Mag.. 2008;July-August 2008:86–100.
Willger SD, Puttikamonkul S, Kim K-H, et al. A Sterol-Regulatory Element Binding Protein Is Required for Cell Polarity, Hypoxia Adaptation, Azole Drug Resistance, and Virulence in Aspergillus fumigatus. PLoS Pathog. 2008;4:e1000200. http://dx.doi.org/10.1371%2Fjournal.ppat.1000200
Yan S, Liu H, Mohr TJ, et al. Role of recombination in the evolution of the model plant pathogen Pseudomonas syringae pv. tomato DC3000, a very atypical tomato strain. Appl Environ Microbiol. 2008;74:3171–3181. http://www.ncbi.nlm.nih.gov/pubmed/18378665
Yang Y, Koopman JS, Samore MH, Eubank S, Lewis B. Model analysis of potential causes for pertussis secular trends. Asilomar, California; 2008. Epidemics Journal and Conference on Infectious Diseases Dynamics.
Zhang C CO Cammer S Will R Kenyon R Sullivan D et al. An emerging cyberinfrastructure for biodefense pathogen and pathogen-host data. Nucleic Acids Research. 2008;38.
Zhao X, Deyanova EG, Lubbers LS, et al. Differential mass spectrometry of rat plasma reveals proteins that are responsive to 17beta-estradiol and a selective estrogen receptor modulator PPT. J Proteome Res. 2008;7:4373–4383. http://www.ncbi.nlm.nih.gov/pubmed/18785765
Barrett C, Bisset K, Chen J, et al. Effect of public policies and individual behavior on the co-evolution of social networks and infectious disease dynamics. Rutgers University; 2007. Paper Presented at DIMACS Workshop on Computational Methods for Dynamic Interaction Networks.
Barrett C, Bisset K, Chen J, et al. Effect of public policies and individual behavior on the co-evolution of social networks and infectious disease dynamics. Rutgers University; 2007. Paper Presented at DIMACS Workshop on Computational Methods for Dynamic Interaction Networks.
Barrett C, Bisset K, Chen J, et al. Effect of public policies and individual behavior on the co-evolution of social networks and infectious disease dynamics. Rutgers University; 2007. Paper Presented at DIMACS Workshop on Computational Methods for Dynamic Interaction Networks.
Barrett C, Bisset K, Chen J, et al. Effect of public policies and individual behavior on the co-evolution of social networks and infectious disease dynamics. Rutgers University; 2007. Paper Presented at DIMACS Workshop on Computational Methods for Dynamic Interaction Networks.
Barrett C, Bisset K, Chen J, et al. Effect of public policies and individual behavior on the co-evolution of social networks and infectious disease dynamics. Rutgers University; 2007. Paper Presented at DIMACS Workshop on Computational Methods for Dynamic Interaction Networks.
Barrett C, Bisset K, Chen J, et al. Effect of public policies and individual behavior on the co-evolution of social networks and infectious disease dynamics. Rutgers University; 2007. Paper Presented at DIMACS Workshop on Computational Methods for Dynamic Interaction Networks.
Barrett C, Bisset K, Eubank S, et al. A scalable data management tool to support epidemiological modeling of large urban regions. In: Research and Advanced Technology for Digital Libraries. Vol. 4675. Springer Berlin/Heidelberg; 2007:546–548. http://www.springerlink.com/content/g38x1801770177g7/
Barrett C, Bisset K, Eubank S, et al. A scalable data management tool to support epidemiological modeling of large urban regions. In: Research and Advanced Technology for Digital Libraries. Vol. 4675. Springer Berlin/Heidelberg; 2007:546–548. http://www.springerlink.com/content/g38x1801770177g7/
Barrett C, Bisset K, Eubank S, et al. A scalable data management tool to support epidemiological modeling of large urban regions. In: Research and Advanced Technology for Digital Libraries. Vol. 4675. Springer Berlin/Heidelberg; 2007:546–548. http://www.springerlink.com/content/g38x1801770177g7/
Barrett C, Bisset K, Eubank S, et al. A scalable data management tool to support epidemiological modeling of large urban regions. In: Research and Advanced Technology for Digital Libraries. Vol. 4675. Springer Berlin/Heidelberg; 2007:546–548. http://www.springerlink.com/content/g38x1801770177g7/
Barrett C, Bisset K, Eubank S, Kumar VSA, Marathe M, Mortveit H. Modeling and simulation of large biological, information and socio-technical systems: An interaction-based approach. In: Proceedings of the Short Course on Modeling and Simulation of Biological Networks, AMS Lecture Notes, Series: PSAPM. Vol. 64.; 2007:101–147.
Barrett C, Bisset K, Eubank S, Kumar VSA, Marathe M, Mortveit H. Modeling and simulation of large biological, information and socio-technical systems: An interaction-based approach. In: Proceedings of the Short Course on Modeling and Simulation of Biological Networks, AMS Lecture Notes, Series: PSAPM. Vol. 64.; 2007:101–147.
Barrett C, Bisset K, Eubank S, Kumar VSA, Marathe M, Mortveit H. Modeling and simulation of large biological, information and socio-technical systems: An interaction-based approach. In: Proceedings of the Short Course on Modeling and Simulation of Biological Networks, AMS Lecture Notes, Series: PSAPM. Vol. 64.; 2007:101–147.
Barrett C, Bisset K, Eubank S, Kumar VSA, Marathe M, Mortveit H. Modeling and simulation of large biological, information and socio-technical systems: An interaction-based approach. In: Proceedings of the Short Course on Modeling and Simulation of Biological Networks, AMS Lecture Notes, Series: PSAPM. Vol. 64.; 2007:101–147.
Barrett C, Bisset K, Eubank S, Kumar VSA, Marathe M, Mortveit H. Modeling and simulation of large biological, information and socio-technical systems: An interaction-based approach. In: Proceedings of the Short Course on Modeling and Simulation of Biological Networks, AMS Lecture Notes, Series: PSAPM. Vol. 64.; 2007:101–147.
Barrett C, Eubank S, Lewis B, Marathe M. Information systems for detection and management of pandemics. In: Shekar S, Xiong H, eds. Encyclopedia of Geographic Information Systems. Springer Verlag; 2007.
Barrett C, Eubank S, Lewis B, Marathe M. Information systems for detection and management of pandemics. In: Shekar S, Xiong H, eds. Encyclopedia of Geographic Information Systems. Springer Verlag; 2007.
Barrett C, Eubank S, Lewis B, Marathe M. Information systems for detection and management of pandemics. In: Shekar S, Xiong H, eds. Encyclopedia of Geographic Information Systems. Springer Verlag; 2007.
Barrett C, Hunt H, Marathe M, et al. Computational aspects of analyzing social network dynamics. Hyderabad, India; 2007:2268–2273. Proceedings of the International Joint Conference on Artificial Intelligence (IJCAI 07). http://www.aaai.org/Papers/IJCAI/2007/IJCAI07-365.pdf
Barrett C, Hunt H, Marathe M, et al. Computational aspects of analyzing social network dynamics. Hyderabad, India; 2007:2268–2273. Proceedings of the International Joint Conference on Artificial Intelligence (IJCAI 07). http://www.aaai.org/Papers/IJCAI/2007/IJCAI07-365.pdf
Barrett C, Vullikanti A, Marathe MV. An integrated approach to computing capacity and developing cross layer protocols for wireless networks. North Brunswick, NJ; 2007. Deriving Mobility Models from First Principles and Their Applications NSF Workshop – Mobility in Wir.
Barrett C, Vullikanti A, Marathe MV. An integrated approach to computing capacity and developing cross layer protocols for wireless networks. North Brunswick, NJ; 2007. Deriving Mobility Models from First Principles and Their Applications NSF Workshop – Mobility in Wir.
Barrett C, Vullikanti A, Marathe MV. An integrated approach to computing capacity and developing cross layer protocols for wireless networks. North Brunswick, NJ; 2007. Deriving Mobility Models from First Principles and Their Applications NSF Workshop – Mobility in Wir.
Blumer AD, Mortveit HS, Patterson C. Formal modeling of process migration. Amserdam, Netherlands; 2007. 17th International Conference on Field Programmable Logic and Applications.
Cabrera JA H-KK Calver L Garner HR. Expanding Researchers. Jbc. 2007;33:E62–E67.
Cabrera JA H-KK Calver L Garner HR. Expanding Researchers. Jbc. 2007;33:E62–E67.
Cabrera JA H-KK Calver L Garner HR. Expanding Researchers. Jbc. 2007;33:E62–E67.
Camacho D, Vera Licona P, Mendes P, Laubenbacher R. Comparison of Reverse-Engineering Methods Using an in Silico Network. Annals of the New York Academy of Sciences. 2007;1115:73–89. http://dx.doi.org/10.1196%2Fannals.1407.006
Camacho D, Vera Licona P, Mendes P, Laubenbacher R. Comparison of Reverse-Engineering Methods Using an in Silico Network. Annals of the New York Academy of Sciences. 2007;1115:73–89. http://dx.doi.org/10.1196%2Fannals.1407.006
Case CL, Mukhopadhyay B. Kinetic characterization of recombinant human cytosolic phosphoenolpyruvate carboxykinase with and without a His10-tag. Biochimica et Biophysica Acta. 2007;(in press).
Chafekar D, Kumar VSA, Marathe M, Parthasarathy S, Srinivasan A. Cross-layer latency minimization in wireless networks with SINR constraints. Montreal, Quebec, Canada: ACM, New York, NY, USA; 2007:110–119. Proceedings of the 8th ACM International symposium on Mobile ad hoc networking and computing. http://doi.acm.org/10.1145/1288107.1288123
Chafekar D, Kumar VSA, Marathe M, Parthasarathy S, Srinivasan A. Cross-layer latency minimization in wireless networks with SINR constraints. Montreal, Quebec, Canada: ACM, New York, NY, USA; 2007:110–119. Proceedings of the 8th ACM International symposium on Mobile ad hoc networking and computing. http://doi.acm.org/10.1145/1288107.1288123
Chen D-J, Lee C-Y, Park C-H, Mendes P. Parallelizing simulated annealing algorithms based on high-performance computer. Journal of Global Optimization. 2007;39:261–289.
Chen J, Macauley M, Marathe A. Role of network and production capacity in allocating market power. College Park, MD; 2007. Trans-Atlantic INFRADAY, Conference on Applied Infrasructure Modeling and Policy Analysis "Critical .
Chen J, Macauley M, Marathe A. Trans-Atlantic INFRADAY. College Park, MD, November 2, 2007; 2007. Applied Infrastructure Modeling and Policy Analysis.
Dimitrova ES, Jarrah AS, Laubenbacher R, Stigler B. A Grobner fan method for biochemical network modeling. Waterloo, Ontario, Canada: Acm; 2007. Proceedings of the 2007 international symposium on Symbolic and algebraic computation.
Fisher M, Miller D, Brewster C, Husseneder C, Dickerman A. Diversity of gut bacteria of Reticulitermes flavipes as examined by 16S rRNA gene sequencing and amplified rDNA restriction analysis. Current Microbiology. 2007;55:254–259.
Garner HR. Array based measurements of microsatellite instability. Nimblegen I, ed. Madison, Wisc; 2007.
Garner HR. D. Department UTSWS, ed.; 2007.
Garner HR. Text similarity searching and data mining of Medline: from studies in ethics to drug discovery. National Library of Medicine NIH, ed.; 2007.
Garner HR. Microsatellites and Breast Cancer. DC BCS in W, ed. Washington, DC; 2007.
Garner HR. Collaborative Approaches for Biomedical Research and Homeland Security. MAGPI Forum IVC, ed.; 2007.
Garner HR. Data mining driven drug discovery. Cogentus, ed. San Francisco; 2007.
Garner HR. Role of microsatellite instability in cancer, The design, analysis and interpretation of custom microarrays. London; 2007. Publication Ethics.
Garner HR. Role of microsatellite instability in cancer, The design, analysis and interpretation of custom microarrays. London; 2007. Publication Ethics.
Greene JM, Collins F, Lefkowitz EJ, et al. National Institute of Allergy and Infectious Diseases bioinformatics resource centers: new assets for pathogen informatics. Infect Immun. 2007;75:3212–3219. http://www.ncbi.nlm.nih.gov/pubmed/17420237
Hoeschele I. Mapping quantitative trait loci in outbred populations. In: Balding DJ, Bishop M, Cannings C, eds. Handbook of statistical genetics. New York: Wiley; 2007:623–677.
Johnson EF, Mukhopadhyay B. A novel coenzyme F420-dependent sulfite reductase and a small size sulfite reductase in methanogenic archaea. In: Dahl C, Friedrich CG, eds. Proceedings of the International Symposium on Microbial Sulfur Metabolism. New York, N.Y.: Springer,; 2007.
Kale SD, Tyler BM. Device And Method For Biolistic Transformation Of Cells. Vol. Serial No. 60/942,474. Usa; 2007.
Kale SD, Tyler BM. Characterization of Several Avr Genes From Phytophthora sojae Using a Novel Quantitative, in vivo, Biolistic Assay. Blacksburg, VA; 2007. Virginia Tech Undergraduate Research and Prospective Graduate Student Conference.
Karaba A, Dixit S, Greco R, et al. Improvement of water use efficiency in rice by expression of HARDY, an Arabidopsis drought and salt tolerance gene. Proceedings of the National Academy of Sciences. 2007;104:15270–15275. http://www.pnas.org/content/104/39/15270.abstract
Kathirithamby J, Gillespie JJ, Cognato AI, Johnston JS. Cordelia. Zootaxa. 2007;1636:59–68.
Kim KH, Cho Y, La Rota M, Cramer RA, Lawrence CB. Functional analysis of the Alternaria brassicicola non-ribosomal peptide synthetase gene AbNPS2 reveals a role in conidial cell wall construction. Molecular Plant Pathology. 2007;8:23–39.
Koterski J, Twenhafel N, Porter A, et al. Gene expression profiling of nonhuman primates exposed to aerosolized Venezuelan equine encephalitis virus. FEMS Immunol Med Microbiol. 2007;51:462–472. http://www.ncbi.nlm.nih.gov/pubmed/17894805
Lazar IM. Microfluidic Devices with Mass Spectrometry Detection. In: Handbook of Capillary and Microchip Electrophoresis and Associated Microtechniques. CRC Press; 2007:1459–1506.
Martins AM, Sha W, Evans C, Martino-Catt S, Mendes P, Shulaev V. Comparison of sampling techniques for parallel analysis of transcript and metabolite levels in Saccharomyces cerevisiae. Yeast. 2007;24:181–188. http://dx.doi.org/10.1002%2Fyea.1442
Michalak P, Kim YB, Gao J. Computational Challenges of Microarray Analysis. Computational genomics: current methods. 2007:87.
Ragucci TJ CA Huebschman ML and Garner HR. Film Strain Measurement through Hyperspectral Polarimetry. Proceedings of American Institute of Aeronautics and Astronautics. 2007.
Ragucci TJ CA Huebschman ML and Garner HR. Film Strain Measurement through Hyperspectral Polarimetry. Proceedings of American Institute of Aeronautics and Astronautics. 2007.
Roberts D, Simoni DA, Marathe M, et al. Teragrid enabled national scale epidemiological models for MIDAS.; 2007. Proceedings of Tera.
Roberts D, Simoni DA, Marathe M, et al. Teragrid enabled national scale epidemiological models for MIDAS.; 2007. Proceedings of Tera.
Roberts D, Simoni DA, Marathe M, et al. Teragrid enabled national scale epidemiological models for MIDAS.; 2007. Proceedings of Tera.
Roberts D, Simoni DA, Marathe M, et al. Teragrid enabled national scale epidemiological models for MIDAS.; 2007. Proceedings of Tera.
Setubal JC, Verjovski-Almeida S. Brazilian symposium on bioinformatics. Computers in Biology and Medicine. 2007;37:113–114.
Snyder EE, Kampanya N, Lu J, et al. PATRIC: The VBI PathoSystems Resource Integration Center. Nucleic Acids Research. 2007;35:D401–D406.
Stock KF, Distl O, Hoeschele I. Influence of priors in Bayesian estimation of genetic parameters for multivariate threshold models using Gibbs sampling. Genetics Selection Evolution. 2007;39:123–137.
Stock KF, Distl O, Hoeschele I. Bayesian estimation of genetic parameters for multivariate threshold and continuous phenotypes and molecular genetic data in simulated horse populations using Gibbs sampling. BMC Genet. 2007;8:19. http://www.hubmed.org/display.cgi?uids=17490471
Swarup S, Gasser L. The role of anticipation in the emergence of language. In: Butz M, Sigaud O, Baldasarre G, Pezzulo G, eds. Anticipatory Behavior in Adaptive Learning Systems: From Brains to Individual and Social Behavior. Vol. 4520. Springer; 2007:35–56.
Tian YY, Dickerman AW. GeneTrees: a phylogenomics resource for prokaryotes. Nucleic Acids Research. 2007;35:D328–D331.
Torto-Alalibo TA, Tripathy S, Smith BM, et al. Expressed sequence tags from phytophthora sojae reveal genes specific to development and infection. Mol Plant Microbe Interact. 2007;20:781–793. http://www.ncbi.nlm.nih.gov/pubmed/17601166
Venancio TM, DeMarco R, Almeida GT, Oliveira KC, Setubal JC, Verjovski-Almeida S. Analysis of Schistosoma mansoni genes shared with Deuterostomia and with possible roles in host interactions. BMC Genomics. 2007;8:407. http://www.ncbi.nlm.nih.gov/pubmed/17996068
Wang C, Saldanha M, Sheng X, et al. Roles of poly-3-hydroxybutyrate (PHB) and glycogen in symbiosis of Sinorhizobium meliloti with Medicago sp. Microbiology. 2007;153:388–398. http://www.ncbi.nlm.nih.gov/pubmed/17259610
Wang C, Sheng X, Equi RC, Trainer MA, Charles TC, Sobral BW. Influence of the poly-3-hydroxybutyrate (PHB) granule-associated proteins (PhaP1 and PhaP2) on PHB accumulation and symbiotic nitrogen fixation in Sinorhizobium meliloti Rm1021. J Bacteriol. 2007;189:9050–9056. http://www.ncbi.nlm.nih.gov/pubmed/17921298
Wang C, Sheng X, Equi RC, Trainer MA, Charles TC, Sobral BWS. Influence of the poly-3-hydroxybutyrate (PHB) granule-associated proteins (PhaP1 and PhaP2) on PHB accumulation and symbiotic nitrogen fixation in Sinorhizobium meliloti Rm1021. J. Bacteriol.. 2007;189:9050–9056. http://jb.asm.org/cgi/content/abstract/189/24/9050
Yates NA, Deyanova EG, Geissler W, et al. Identification of peptidase substrates in human plasma by FTMS based differential mass spectrometry. International Journal of Mass Spectrometry. 2007;259:174–183.
Yu GX, Snyder EE, Boyle SM, et al. A versatile computational pipeline for bacterial genome annotation improvement and comparative analysis, with Brucella as a use case. Nucleic Acids Res. 2007;35:3953–3962. http://www.ncbi.nlm.nih.gov/pubmed/17553834
Yu GX, Snyder EE, Boyle SM, et al. A versatile computational pipeline for bacterial genome annotation improvement and comparative analysis, with Brucella as a use case. Nucleic Acids Res. 2007;35:3953–3962. http://www.ncbi.nlm.nih.gov/pubmed/17553834
Atkins K, Chen J, Anil Kumar VS, Macauley M, Marathe A. Locational market power in power markets. Potsdam, Germany; 2006. Proceedings of 29th IAEE International Conference.
Atkins K, Chen J, Anil Kumar VS, Macauley M, Marathe A. Locational market power in power markets. Potsdam, Germany; 2006. Proceedings of 29th IAEE International Conference.
Atkins K, Chen J, Kumar VSA, Marathe A. Structural analysis of electrical power networks.; 2006. Proceedings of 3rd International Conference on Critical Infrastructures.
Atkins K, Chen J, Kumar VSA, Marathe A. Structural analysis of electrical power networks.; 2006. Proceedings of 3rd International Conference on Critical Infrastructures.
Babson E, Barcelo H, de Longueville M, Laubenbacher R. Homotopy theory of graphs. Journal of Algebraic Combinatorics. 2006;24:31–44.
Barrett C, Eubank S, Marathe M. Modeling and simulation of large biological, information and socio-technical systems: An interaction based approach. In: D G, Smoka SA, Wegner P, eds. Interactive Computing: A new Paradigm. Springer Berlin Heidelberg; 2006:353–394.
Barrett C, Eubank S, Marathe M. Modeling and simulation of large biological, information and socio-technical systems: An interaction based approach. In: D G, Smoka SA, Wegner P, eds. Interactive Computing: A new Paradigm. Springer Berlin Heidelberg; 2006:353–394.
Barrett C, Eubank S, Marathe M. Modeling and simulation of large biological, information and socio-technical systems: An interaction based approach. In: D G, Smoka SA, Wegner P, eds. Interactive Computing: A new Paradigm. Springer Berlin Heidelberg; 2006:353–394.
Barrett C, Eubank S, Marathe M, Mortveit H. An interaction-based computing approach to modeling and simulation of large biological and socio-technical systems. In: AMS Lecture Notes.; 2006.
Barrett C, Eubank S, Marathe M, Mortveit H. An interaction-based computing approach to modeling and simulation of large biological and socio-technical systems. In: AMS Lecture Notes.; 2006.
Barrett C, Eubank S, Marathe M, Mortveit H. An interaction-based computing approach to modeling and simulation of large biological and socio-technical systems. In: AMS Lecture Notes.; 2006.
Barrett C, Hunt III H, Marathe M, et al. Computational complexity of analyzing the dynamic reliability of interdependent infrastructures.; 2006. Proceedings of the Third International Conference on Critical Infrastructures In press.
Barrett C, Hunt III H, Marathe M, et al. Complexity of reachability problems for finite discrete dynamical systems. Journal of Computer and System Sciences. 2006;72:1317–1345.
Barrett C, Hunt III H, Marathe M, et al. Computational complexity of analyzing the dynamic reliability of interdependent infrastructures.; 2006. Proceedings of the Third International Conference on Critical Infrastructures In press.
Barrett C, Hunt III H, Marathe M, et al. Complexity of reachability problems for finite discrete dynamical systems. Journal of Computer and System Sciences. 2006;72:1317–1345.
Barrett C, Hunt HBIII, Marathe M, Ravi S, Rosenkrantz D, Stearns R. Analysis problems for sequential dynamical systems and communicating state machines. Marianske Lazne, Czech Republic; 2006:159–172. Proceedings of 2th Mathematical Foundations of Computer Science (MFCS 01), Lecture Notes in Computer 2136.
Barrett C, Hunt HBIII, Marathe M, Ravi S, Rosenkrantz D, Stearns R. Analysis problems for sequential dynamical systems and communicating state machines. Marianske Lazne, Czech Republic; 2006:159–172. Proceedings of 2th Mathematical Foundations of Computer Science (MFCS 01), Lecture Notes in Computer 2136.
Barrett CL, Eubank S, Marathe MV. An Interaction Based Approach to Modeling and Simulation of Large Biological, Information and Socio-Technical Systems. In: Interactive Computation: The New Paradigm. Springer; 2006:353–392.
Barrett CL, Eubank S, Marathe MV. An Interaction Based Approach to Modeling and Simulation of Large Biological, Information and Socio-Technical Systems. In: Interactive Computation: The New Paradigm. Springer; 2006:353–392.
Barrett CL, Eubank S, Marathe MV. An Interaction Based Approach to Modeling and Simulation of Large Biological, Information and Socio-Technical Systems. In: Interactive Computation: The New Paradigm. Springer; 2006:353–392.
Betthauser JM, Pfister-Genskow M, Xu HZ, et al. Nucleoplasmin facilitates reprogramming and in vivo development of bovine nuclear transfer embryos. Molecular Reproduction and Development. 2006;73:977–986.
Bissel P, Geherin S, Igarashi K, Gandour RD, Lazar IM, Castagnoli N. Mass spectrometric studies on 4-aryl-1-cyclopropyl-1,2-dihydropyridinyl derivatives: an examination of a novel fragmentation pathway. Journal of Mass Spectrometry. 2006;41:1643–1653.
Bisset K, Lewis B, Kumar K, Mortveit H. Will pandemic flu get you ? Using math, supercomputers, and computer science to solve pressing public health problems.; 2006.
Bisset K, Lewis B, Kumar K, Mortveit H. Will pandemic flu get you ? Using math, supercomputers, and computer science to solve pressing public health problems.; 2006.
Cameron CJ, Workman RG, Williams B, et al. Monitoring amino acid metabolism in Medicago truncatula using capillary electrophoresis-mass spectrometry.; 2006. Abstracts of Papers of the American Chemical Society 231.
Chen J, Marathe M, Rajaraman R, Sundaram R. The confluent capacity of the internet: congestion vs. dilation. Providence, Rhode Island, May 19-22, 2003; 2006:5–15. Proceedings of the 26th International Conference on Distributed Computing Systems (ICDCS).
Cho YR, Davis JW, Kim KH, et al. A high throughput targeted gene disruption method for Alternaria brassicicola functional genomics using linear minimal element (LME) constructs. Molecular Plant-Microbe Interactions. 2006;19:7–15.
Colon-Reyes O, Jarrah A, Laubenbacher R, Sturmfels B. Monomial dynamical systems over finite fields. Complex Systems. 2006;16:333–342.
Cramer RA, La Rota CM, Cho Y, et al. Bioinformatic analysis of expressed sequence tags derived from a compatible Alternaria brassicicola-Brassica oleracea interaction. Molecular Plant Pathology. 2006;7:113–124.
Deans AR, Gillespie JJ, Yoder MJ. An evaluation of ensign wasp classification (Hymenoptera: Evaniidae) based on molecular data and insights from ribosomal RNA secondary structure. Systematic Entomology. 2006;31:517–528.
Duncan C, Kobourov S, Anil Kumar VS. Optimal constrained graph exploration. ACM Transactions of Algorithms. 2006;2:380–402.
Eidenbenz S, Kumar VSA. Equilibria in topology control games for ad hoc networks. Mobile Networks and Applications. 2006;11:143–159.
Eubank S. Cyberinfrastructure for epidemiological simulations.; 2006. Invited Presentation to NCSA Infectious Disease Informatics at the University of Illinois at Urbana-.
Eubank S. Validating model assumptions. Washington, DC; 2006. Institute of Medicine Workshop on the Role of Community-Based Mitigation Strategies.
Garcia LD, Jarrah AS, Laubenbacher R. Sequential dynamical systems over words. Applied Mathematics and Computation. 2006;174:500–510.
Garner HR. Discovery of new cosmetic compounds with data mining. Cosmetics MK, ed. Dallas; 2006.
Garner HR. Holographic Visualization. Astrophysics JI for L, ed. Boulder; 2006.
Garner HR. Development of a 3D visualization system. Missouri U of, ed.; 2006.
Garner HR. Development of a Holographic Visualization System. Department UTAP, ed.; 2006.
Garner HR. VNTRs in bioinformatics and evolution. meeting M 2006, ed. Budapest, Hungary; 2006.
He Y, Reichow S, Ramamoorthy S, et al. Brucella melitensis triggers time-dependent modulation of apoptosis and down-regulation of mitochondrion-associated gene expression in mouse macrophages. Infect Immun. 2006;74:5035–5046. http://www.ncbi.nlm.nih.gov/pubmed/16926395
Hill J, Beaubien A, Harrison T, et al. Monitoring carbohydrate metabolism in Medicago truncatula using capillary electrophoresis.; 2006. Abstracts of Papers of the American Chemical Society 231.
Hoops S, Sahle S, Gauges R, et al. COPASI- A COmplex PAthway SImulator. Bioinformatics. 2006;22:3067–3074.
Hunt III HB, Marathe M, Stearns R. The complexities of unquantified, quantified, and stochastic constrained satisfaction problems. In special issue of Discrete Applied Mathematics. 2006.
Hunt HBIII, Marathe MV, Stearns RE, Rosenkrantz DJ. Towards a predictive complexity theory of periodically specified problems: A survey. In: Percus A, Istrate G, Moore C, eds. Computational Complexity and Statistical Physics. Oxford University Press; 2006:285–318.
Iskar M, Erdem A, Erdem E, et al. CAPRIS: a database for cancer gene promoter related motif search. Febs Journal. 2006;273:248.
Istrate G, Hansson A, Marathe M, Thulasidasan S, Barrett C. Semantic compression of TCP traces. In: Boavida F, Plagemann T, Stiller B, Westphal C, Monteiro E, eds. Proceedings of IFIP Conference on Networking Conference, Lecture Notes in Computer Science. Vol. 3976. Berlin/Heidelberg:Springer Verlag; 2006:123–135.
Kim Y, Gao J, Michalak P. A New Maximum-Relevance Criterion for Significant Gene Selection. In: Rajapakse J, Wong L, Acharya R, eds. Pattern Recognition in Bioinformatics. Springer Berlin / Heidelberg; 2006:71–80. Lecture Notes in Computer Science 4146. http://dx.doi.org/10.1007%2F11818564_9
Kjer KM, Gillespie JJ, Ober KA. Structural homology in ribosomal RNA, and a deliberation on POY. Arthropod Systematics & Phylogenetics. 2006;64:159–164.
Kumar VSA, Marathe M, Thakur M, Sundaram R, Thulasidasan S. Scaling laws for the internet over urban regions, CAIDA (Cooperative Association for Internet Data Analysis). Proceedings are in electronic form.; 2006. ISMA 2006 WIT: Workshop on the Internet Topology. http://www.ccs.neu.edu/home/koods/papers/kumar06scaling.pdf
Kumar VSA, Marathe M, Thakur M, Sundaram R, Thulasidasan S. Scaling laws for the internet over urban regions, CAIDA (Cooperative Association for Internet Data Analysis). Proceedings are in electronic form.; 2006. ISMA 2006 WIT: Workshop on the Internet Topology. http://www.ccs.neu.edu/home/koods/papers/kumar06scaling.pdf
Kumar VSA, Marathe MV, Parthasarathy S, Srinivasan A, Zust S. Provable Algorithms for Parallel Generalized Sweep Scheduling. Journal of Parallel and Distributed Computing (JPDC). 2006;66:807–821.
Kumar VSA, Marathe MV, Parthasarathy S, Srinivasan A, Zust S. Provable Algorithms for Parallel Generalized Sweep Scheduling. Journal of Parallel and Distributed Computing (JPDC). 2006;66:807–821.
Lai H, Kraszewski JL, Purwantini E, Mukhopadhyay B. Identification of pyruvate carboxylase genes in Pseudomonas aeruginosa PAO1 and development of a P. aeruginosa-based overexpression system for alpha4- and alpha4beta4-type pyruvate carboxylases. Appl Environ Microbiol. 2006;72:7785–7792. http://www.ncbi.nlm.nih.gov/pubmed/16997990
Laubenbacher R, Mendes P. A discrete approach to top-down modeling of biochemical networks. In: R E, L K, eds. Computational Systems Biology. Elsevier, Academic Press; 2006.
Laubenbacher R, Mendes P. A discrete approach to top-down modeling of biochemical networks. In: R E, L K, eds. Computational Systems Biology. Elsevier, Academic Press; 2006.
Laubenbacher R, Pareigis B. Update schedules of sequential dynamical systems. Discrete Applied Mathematics. 2006;154:980–994.
Lazar IM, Grym J, Foret F. Microfabricated devices: A new sample introduction approach to mass spectrometry. Mass Spectrometry Reviews. 2006;25:573–594.
Lazar IM, Trisiripisal P, Sarvaiya HA. Microfluidic liquid chromatography system for proteomic applications and biomarker screening. Analytical Chemistry. 2006;78:5513–5524.
Lorenzini DM, da Silva PI Jr., Soares MB, Arruda P, Setubal J, Daffre S. Discovery of immune-related genes expressed in hemocytes of the tarantula spider Acanthoscurria gomesiana. Dev Comp Immunol. 2006;30:545–556. http://www.ncbi.nlm.nih.gov/pubmed/16386302
Marsch-Martinez N, Greco R, Becker JD, et al. BOLITA, an Arabidopsis AP2/ERF-like transcription factor that affects cell expansion and proliferation/differentiation pathways. Plant Molecular Biology. 2006;62:825–843.
Mendes P. Metabolomics and the challenges ahead. Briefings in Bioinformatics. 2006;7:127.
Michalak P. NMAF. Genetics of reproductive isolation and species differences in model systems. In: Evolutionary genetics: concepts and case studies. Oxford University Press, USA; 2006.
Rodriguez-Fernandez M, Mendes P, Banga JR. A hybrid approach for efficient and robust parameter estimation in biochemical pathways. Biosystems. 2006;83:248–265.
Sarvaiya HA, Yoon JH, Lazar IM. Proteome profile of the MCF7 cancer cell line: a mass spectrometric evaluation. Rapid Communications in Mass Spectrometry. 2006;20:3039–3055.
Shallom JM, Dongre N, Dharmanolla C, et al. The pathosystems resource integration center: implications for viral pathogens. Journal of Clinical Virology. 2006;36:S205.
Tyler BM, Tripathy S, Zhang XM, et al. Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis. Science. 2006;313:1261–1266.
Wharton RA, Yoder MJ, Gillespie JJ, Patton JC, Honeycutt RL. Relationships of Exodontiella, a non-alysiine, exodont member of the family Braconidae (Insecta, Hymenoptera). Zoologica Scripta. 2006;35:323–340.
Adasi K. Pyrethroid resistance and its potential interaction with malaria infection rates in Ghanaian field populations of Anopheles gambiae. Vol. PhD [Ph.D. thesis]. United Kingdom: University of Liverpool; 2005.
Adasi K, Hemingway J. KDR-type pyrethroid resistance in Anopheles gambiae sensu stricto from south-eastern Ghana. Yaounde, Camerron; 2005. Conference Proceedings of Fourth MIM Pan-African Malaria Conference.
Angenstein F, Evans AM, Ling SC, et al. Proteomic characterization of messenger ribonucleoprotein complexes bound to nontranslated or translated poly(A) mRNAs in the rat cerebral cortex. J Biol Chem. 2005;280:6496–6503. http://www.ncbi.nlm.nih.gov/pubmed/15596439
Barcelo H, Laubenbacher R. Perspectives on A-homotopy theory and its applications. Discrete Mathematics. 2005;298:39–61.
Barrett C, Drozda M, Engelhart D, et al. Structural Analysis of Ad Hoc Networks: Implications for Protocol Performance.; 2005. Proceedings of the IEEE International Conference on Wireless and Mobile Computing, Communications, a.
Barrett C, Drozda M, Engelhart D, et al. Structural Analysis of Ad Hoc Networks: Implications for Protocol Performance.; 2005. Proceedings of the IEEE International Conference on Wireless and Mobile Computing, Communications, a.
Barrett C, Drozda M, Engelhart D, et al. Structural Analysis of Ad Hoc Networks: Implications for Protocol Performance.; 2005. Proceedings of the IEEE International Conference on Wireless and Mobile Computing, Communications, a.
Barrett C, Eidenbenz S, Kroc L, Marathe M, Smith J. Probabilistic multi-path vs. deterministic single-path protocols for dynamic ad-hoc network scenarios. Santa Fe, New Mexico; 2005:1166–1173. Proceedings of the 2005 ACM Symposium on Applied Computing (SAC).
Barrett C, Eidenbenz S, Kroc L, Marathe M, Smith J. Probabilistic multi-path vs. deterministic single-path protocols for dynamic ad-hoc network scenarios. Santa Fe, New Mexico; 2005:1166–1173. Proceedings of the 2005 ACM Symposium on Applied Computing (SAC).
Barrett C, Eubank S, Marathe M. Modeling and Simulation of Large Biological, Information and Socio-Technical Systems: An Interaction Based Approach. In: Goldin D, Smoka SA, Wegner P, eds. Interactive Computing: A new Paradigm. Springer Berlin Heidelberg; 2005:353–394.
http://isbn.nu/978-3-540-34666-1
Barrett C, Eubank S, Marathe M. Modeling and Simulation of Large Biological, Information and Socio-Technical Systems: An Interaction Based Approach. In: Goldin D, Smoka SA, Wegner P, eds. Interactive Computing: A new Paradigm. Springer Berlin Heidelberg; 2005:353–394.
http://isbn.nu/978-3-540-34666-1
Barrett C, Eubank S, Marathe M. Modeling and Simulation of Large Biological, Information and Socio-Technical Systems: An Interaction Based Approach. In: Goldin D, Smoka SA, Wegner P, eds. Interactive Computing: A new Paradigm. Springer Berlin Heidelberg; 2005:353–394.
http://isbn.nu/978-3-540-34666-1
Barrett C, Stretz P. Infrastructure systems.; 2005.
Bassaganya-Riera J Guri A. King J. Hontecillas R. Peroxisome Proliferator-Activated Receptors: the Nutritionally Controlled Molecular Networks that Integrate Inflammation, Immunity and metabolism. Current Nutrition & Food Science. 2005;1:179–187.
Bing N, Hoeschele I, Ye KY, Eilertsen KJ. Finite mixture model analysis of microarray expression data on samples of uncertain biological type with application to reproductive efficiency. Veterinary Immunology and Immunopathology. 2005;105:187–196.
Broeckling CD, Farag M, Huhman D, et al. Metabolomics: A tool for gene validation, gene discovery, hypothesis building, and mechanistic understanding.; 2005:U503–U504. Abstracts of Papers of the American Chemical Society 230.
Broeckling CD, Huhman DV, Farag MA, et al. Metabolic profiling of Medicago truncatula cell cultures reveals the effects of biotic and abiotic elicitors on metabolism. Journal of Experimental Botany. 2005;56:323–336.
Camacho D, de la Fuente A, Mendes P. The origin of correlations in metabolomics data. Metabolomics. 2005;1:53–63.
Eubank S. Network based models of infectious disease spread. Japanese Journal of Infectious Diseases. 2005;58:S9–S13.
Gao G, Hoeschele I. A note on a conditional enumeration haplotyping method in pedigrees. New York: Springer-Verlag; 2005. Lecture Notes in Bioinformatics.
Gao GM, Hoeschele I. Approximating identity-by-descent matrices using multiple haplotype configurations on pedigrees. Genetics. 2005;171:365–376.
Garner HR. Keynote Speech. conference NSFEPSCRFG, ed. Stillwater, OK; 2005.
Hansson A, Gokhale M, Mortveit H, Tripp J. Urban traffic simulation modeling for reconfigurable hardware. Berlin; 2005:291–298. Proceedings of Industrial Simulation Conference.
Hansson AA, Mortveit HS, Reidys CM. On asynchronous cellular automata. Advances in Complex Systems. 2005;8:521–538.
He YQ, Vines RR, Wattam AR, et al. PIML: The Pathogen Information Markup Language. Bioinformatics. 2005;21:116–121.
Hoeschele I, Li H. A note on joint versus gene-specific mixed model analysis of microarray gene expression data. Biostatistics. 2005;6:183–186.
Huebschman ML MB Hunt J Garner HR. Holographic visualization with micromirror devices. Spie. 2005;June 16.
Huebschman ML MB Hunt J Garner HR. Holographic visualization with micromirror devices. Spie. 2005;June 16.
Huhns M, Singh M, Burstein M, et al. Research directions for service-oriented multiagent systems. IEEE Internet Computing. 2005;9:65–70.
Hunt III HB, Marathe M, Stearns R, Rosenkrantz D. A survey of periodically specified problems. In: Istrate G, Moore C, Percus A, eds. Computational Complexity and Statistical Physics. Oxford Press; 2005:2558–318.
Hunt III HB, Marathe MV, Stearns RE, Rosenkrantz DJ. Survey of periodically specified problems. In: Computational Complexity and Statistical Physics. Oxford University Press; 2005.
Kumar A. Approximation Algorithms for Scheduling on Parallel Machines with Tree Shaped Precedence Constraints. Berkeley, CA,; 2005. Approx Workshop.
Kumar AVS, Marathe MV, Parthasarathy S, Srinivasan A. Algorithmic aspects of capacity in wireless. ACM Press New York, NY, USA; 2005:133–144. Proceedings of the International Conference on Measurements and Modeling of Computer Systems (Sigmet.
Kumar AVS, Marathe MV, Parthasarathy S, Srinivasan A. Algorithmic aspects of capacity in wireless. ACM Press New York, NY, USA; 2005:133–144. Proceedings of the International Conference on Measurements and Modeling of Computer Systems (Sigmet.
Kumar VSA, Marathe MV, Parthasarathy S, Srinivasan A. Approximation algorithms for scheduling on multiple machines. Pittsburgh, Pennsylvania; 2005:254–263. Proceedings of 46th Annual IEEE Symposium on Foundations of Computer Science (FOCS'05).
Kumar VSA, Marathe MV, Parthasarathy S, Srinivasan A. Approximation algorithms for scheduling on multiple machines. Pittsburgh, Pennsylvania; 2005:254–263. Proceedings of 46th Annual IEEE Symposium on Foundations of Computer Science (FOCS'05).
Kumar VSA, Marathe MV, Parthasarathy S, Srinivasan A. Scheduling on unrelated machines under tree-like precedence constraints. Cambridge, MA; 2005:146–157. Proceedings of 8th International Workshop on Approximation Algorithms for Combinatorial Optimization 3624.
Kumar VSA, Marathe MV, Parthasarathy S, Srinivasan A, Zust S. Provable algorithms for parallel sweep scheduling on unstructured meshes.; 2005:26–36. Proceedings of International Parallel and Distributed Processing Symposium (IPDPS).
Kumar VSA, Marathe MV, Parthasarathy S, Srinivasan A, Zust S. Provable algorithms for parallel sweep scheduling on unstructured meshes.; 2005:26–36. Proceedings of International Parallel and Distributed Processing Symposium (IPDPS).
Kumar VSA, Parthasarathy S, Marathe MV, Srinivasan A, Zust S. Provable algorithms for parallel sweep scheduling for unstructured meshs. Denver, Colorado; 2005. 19th IEEE International Parallel and Distributed Processing Symposium (IPDPS-05).
Kumar VSA, Parthasarathy S, Marathe MV, Srinivasan A, Zust S. Provable algorithms for parallel sweep scheduling for unstructured meshs. Denver, Colorado; 2005. 19th IEEE International Parallel and Distributed Processing Symposium (IPDPS-05).
Le Novere N, Finney A, Hucka M, et al. Minimum information requested in the annotation of biochemical models (MIRIAM). Nature Biotechnology. 2005;23:1509–1515.
Lei Z, Elmer AM, Watson BS, Dixon RA, Mendes PJ, Sumner LW. A two-dimensional electrophoresis proteomic reference map and systematic identification of 1367 proteins from a cell suspension culture of the model legume Medicago truncatula. Molecular & Cellular Proteomics. 2005;4:1812–1825.
Mao C, Qiu J, Wang C, Charlea TC, Sobral BWS. NodMutDB: a database for genes and mutants involved in symbiosis. Bioinformatics. 2005;21:2927–2929.
Marathe M. Simulation and modeling of large societal infrastructures I: structural measures for network dynamics. Virginia Tech, Blacksburg, Virginia; 2005. Engineering Science and Mechanics, Dept Seminar Series.
Mendes P, Camacho D, de la Fuente A. Modelling and simulation for metabolomics data analysis. Biochemical Society Transactions. 2005;33:1427–1429.
Omenn GS, States DJ, Adamski M, et al. Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database. Proteomics. 2005;5(13):3226–3245. http://www.ncbi.nlm.nih.gov/pubmed/16104056
Pfister-Genskow M, Myers C, Childs LA, et al. Identification of differentially expressed genes in individual bovine preimplantation embryos produced by nuclear transfer: Improper reprogramming of genes required for development. Biology of Reproduction. 2005;72:546–555.
Setubal JC, Verjovski-Almeida S. Advances in Bioinformatics and Computational Biology. Proceedings of the Brazilian Symposium on Bioinformatics, BSB 2005. Berlin: Springer-Verlag; 2005. Lecture Notes in Bioinformatics 3594.
Suzuki H, Reddy MSS, Naoumkina M, et al. Methyl jasmonate and yeast elicitor induce differential transcriptional and metabolic re-programming in cell suspension cultures of the model legume Medicago truncatula. Planta. 2005;220:696–707.
Tallamy DW, Hibbard BE, Clark TL, Gillespie JJ. Western corn rootworm, cucurbits, and cucurbitacins. In: S.Vidal, Kuhlmann U, Edwards R, eds. Ecology and Management of Western Corn Rootworm (Diabrotica virgifera virgifera LeConte). Wallingford, United Kingdom: CABI publishers; 2005:67–93.
Toroczkai Z, Eubank S. Agent-based modeling as a decision-making tool. The Bridge. 2005;35:22–27.
Tripp J, Hansson A, Gokhale M, Mortveit H. Partitioning hardware and software for reconfigurable supercomputing applications: A case study. Seattle, WA; 2005:27–38. Proceedings of the 2005 ACM/IEEE Conference on Supercomputing '05 Industrial.
Tripp J, Hansson A, Mortveit H, Gokhale M. Metropolitan road traffic simulation on FPGAs. Los Alamitos, CA; 2005:117–126. Proceedings of 13th Annual IEEE Symposium on Field-Programmable Custom Computing Machines (FCCM'05).
Zhao CS, Craig JC, Petzold HE, Dickerman AW, Beers EP. The xylem and phloem transcriptomes from secondary tissues of the Arabidopsis root-hypocotyl. Plant Physiology. 2005;138:803–818.
Adasi K, Hemingway J. KDR-type pyrethroid resistance occurs in molecular S-form of Anopheles gambiae sensu stricto in south-eastern Ghana. Sagebrush Inn, Taos, New Mexico, USA; 2004. Keystone Symposia meeting on Genetic Manipulation of Insects.
Atkins K, Barrett C, Homan C, Marathe A, Marathe M, Thite S. Agent based economic analysis of deregulated electricity markets. Swiss Federal Institute of Technology in Zurich: Zurich, Switzerland; 2004. Proceeding of 6th IAEE European Energy Conference.
Barrett C, Drozda M, Marathe M, Ravi SS, Smith J. A mobility and traffic generation framework for modeling and simulating ad hoc communication networks. Scientific Programming containing selected papers presented at the 6th ACM Symposium on Applied Comp. 2004;12:1–23.
Barrett C, Drozda M, Marathe M, Ravi SS, Smith J. A mobility and traffic generation framework for modeling and simulating ad hoc communication networks. Scientific Programming containing selected papers presented at the 6th ACM Symposium on Applied Comp. 2004;12:1–23.
Barrett C, Eubank S, Kumar VSA, Marathe M. Understanding Large-Scale Social and Infrastructure Networks: A Simulation-Based Approach. SIAM News. 2004;37:1–5. Appears as part of Math Awareness Month on th.
Barrett C, Eubank S, Kumar VSA, Marathe M. Understanding Large-Scale Social and Infrastructure Networks: A Simulation-Based Approach. SIAM News. 2004;37:1–5. Appears as part of Math Awareness Month on th.
Barrett C, Eubank S, Kumar VSA, Marathe M. Understanding Large-Scale Social and Infrastructure Networks: A Simulation-Based Approach. SIAM News. 2004;37:1–5. Appears as part of Math Awareness Month on th.
Barrett C, Eubank S, Kumar VSA, Marathe M. Understanding Large-Scale Social and Infrastructure Networks: A Simulation-Based Approach. SIAM News. 2004;37:1–5. Appears as part of Math Awareness Month on th.
Barrett CL, Marathe MV, Engelhart DC, Sivasubramaniam A. Approximating the connectivity between nodes when simulating large-scale mobile ad hoc radio networks. The Journal of Systems and Software. 2004;73:64(11).
Barrett CL, Marathe MV, Engelhart DC, Sivasubramaniam A. Approximating the connectivity between nodes when simulating large-scale mobile ad hoc radio networks. The Journal of Systems and Software. 2004;73:64(11).
Beers EP, Jones AM, Dickerman AW. The S8 serine, C1A cysteine and Al aspartic protease families in Arabidopsis. Phytochemistry. 2004;65:43–58.
Bino RJ, Hall RD, Fiehn O, et al. Potential of metabolomics as a functional genomics tool. Trends in Plant Science. 2004;9:418–425.
Colon-Reyes O, Laubenbacher R, Pareigis B. Boolean monomial dynamical systems. Annals of Combinatorics. 2004;8:425–439.
Cramer RA, Lawrence CB. Identification of Alternaria brassicicola genes expressed in planta during pathogenesis of Arabidopsis thaliana. Fungal Genetics and Biology. 2004;41:115–128.
de la Fuente A, Bing N, Hoeschele I, Mendes P. Discovery of meaningful associations in genomic data using partial correlation coefficients. Bioinformatics. 2004;20:3565–3574.
de la Fuente A, Bing N, Hoeschele I, Mendes P. Discovery of meaningful associations in genomic data using partial correlation coefficients. Bioinformatics. 2004;20:3565–3574.
DeMarco R, Kowaltowski AT, Machado AA, et al. Saci-1, -2, and -3 and Perere, four novel retrotransposons with high transcriptional activities from the human parasite Schistosoma mansoni. J Virol. 2004;78:2967–2978. http://www.ncbi.nlm.nih.gov/pubmed/14990715
Duckett CN, Gillespie JJ, Kjer KM. Reanalysis of Chrysomelidae data (18S) based on homology assessments. In: Jolivet PH, Santiago-Blay JA, Schmitt M, eds. New Developments on The Biology of Chrysomelidae. Boston, MA.: Kluwer Academic; 2004:3–18.
Englehart C, Sivasubramaniam A, Barrett C, Marathe M, Smith J, Morin M. A spatial analysis of mobility models: application to wireless ad hoc network simulation. Hyatt Regency Crystal City, Arlington, Virginia; 2004:35. Proceedings of 37th Annual Simulation Symposium. http://portal.acm.org/citation.cfm?id=987679.987728
Englehart C, Sivasubramaniam A, Barrett C, Marathe M, Smith J, Morin M. A spatial analysis of mobility models: application to wireless ad hoc network simulation. Hyatt Regency Crystal City, Arlington, Virginia; 2004:35. Proceedings of 37th Annual Simulation Symposium. http://portal.acm.org/citation.cfm?id=987679.987728
Eubank S. Mathematics of Epidemiological Simulations for Response Planning. In: Mathematical Science's Role In Homeland Security: Proceedings Of A Workshop. Washington, DC.: National Academies Press; 2004:166–187. http://www.nap.edu/catalog.php?record_id=10940
Eubank S, Kumar VSA, Marathe M, Srinivasan A, Wang N. Structural and algorithmic aspects of massive social networks. New Orleans, Louisiana: Society for Industrial and Applied Mathematics; 2004:718–727. Proceedings of the fifteenth annual ACM-SIAM symposium on Discrete algorithms. http://portal.acm.org/citation.cfm?id=982792.982902
Eubank S, Kumar VSA, Marathe M, Srinivasan A, Wang N. Structural and algorithmic aspects of massive social networks. New Orleans, Louisiana: Society for Industrial and Applied Mathematics; 2004:718–727. Proceedings of the fifteenth annual ACM-SIAM symposium on Discrete algorithms. http://portal.acm.org/citation.cfm?id=982792.982902
Eubank S, Kumar VSA, Marathe M, Srinivasan A, Wang N. Structural and algorithmic aspects of massive social networks. New Orleans, Louisiana: Society for Industrial and Applied Mathematics; 2004:718–727. Proceedings of the fifteenth annual ACM-SIAM symposium on Discrete algorithms. http://portal.acm.org/citation.cfm?id=982792.982902
Eubank S, Kumar VSA, Marathe MV, Srinivasan A, Wang N. Structural and algorithmic aspects of massive social networks. In: Proceedings of the 15th ACM-SIAM Symposium on Discrete Algorithms (SODA). Society for Industrial and Applied Mathematics Philadelphia, PA, USA; 2004:718–727.
Eubank S, Kumar VSA, Marathe MV, Srinivasan A, Wang N. Structural and algorithmic aspects of massive social networks. In: Proceedings of the 15th ACM-SIAM Symposium on Discrete Algorithms (SODA). Society for Industrial and Applied Mathematics Philadelphia, PA, USA; 2004:718–727.
Funnell DL, Lawrence CB, Pedersen JF, Schardl CL. Expression of the tobacco beta-1,3-glucanase gene, PR-2d, following induction of SAR with Peronospora tabacina. Physiological and Molecular Plant Pathology. 2004;65:285–296.
Gao GM, Hoeschele I, Sorensen P, Du FX. Conditional probability methods for haplotyping in pedigrees. Genetics. 2004;167:2055–2065.
Gent DH, Schwartz HF, Ishimaru CA, Louws FJ, Cramer RA, Lawrence CB. Polyphasic characterization of Xanthomonas strains from onion. Phytopathology. 2004;94:184–195.
Gillespie JJ, Kjer KM, Riley EG, Tallamy DW. The evolution of cucurbitacin pharmacophagy in rootworms: Insight from Luperini paraphyly. In: Jolivet PH, Santiago-Blay JA, Schmitt M, eds. New Developments on The Biology of Chrysomelidae. Boston, MA.: Kluwer Academic; 2004:37–58.
Ho K Q. Xiao E. Fach J. Gao P. Kayne A.R. Dongre S.A. Hefta G. Opiteck. Semi-automated sample Preparation for Plasma Proteomics. J. Assoc. Laboratory Automation,. 2004;9:238–249.
Hulmer J D. Betha K. Ho S.-P. Huang D. Ricci G. Opiteck S.A. Hefta. An Investigation of Plasma Collection, Stabilization, and Storage Procedures for Proteomic Analysis of Clinical Samples. Clinical Proteomics. 2004;1:17–32.
Jenkins H, Hardy N, Beckmann M, et al. A proposed framework for the description of plant metabolomics experiments and their results. Nature Biotechnology. 2004;22:1601–1606.
Laubenbacher R, Stigler B. A computational algebra approach to the reverse engineering of gene regulatory networks. Journal of Theoretical Biology. 2004;229:523–537.
Lorence A, Chevone BI, Mendes P, Nessler CL. Myo-inositol oxygenase offers a possible entry point into plant ascorbate biosynthesis. Plant Physiology. 2004;134:1200–1205.
M. Ryan Weil KPR and HRG. Analysis of Serum Protein Patterns in Cancer Patients. GeneSpring Application Note, Silicon Genetics. 2004.
M. Ryan Weil KPR and HRG. Analysis of Serum Protein Patterns in Cancer Patients. GeneSpring Application Note, Silicon Genetics. 2004.
M.L. Huebschman JH B. Munjuluri A. Takashima and H.R. Garner. Design and performance of a variable spectrum synthesizer. Journal of Review of Scientific Instruments. 2004;Volume 75:4845–4855.
M.L. Huebschman JH B. Munjuluri A. Takashima and H.R. Garner. Design and performance of a variable spectrum synthesizer. The Virtual Journal of Biological Physics Research. 2004;8.
Marathe M, Risenger L, Panconesi A. Experimental analysis of a simple distributed edge coloring algorithm. Journal of experimental Algorithmics. 2004;9:1–23.
Martins AM, Camacho D, Shuman J, Sha W, Mendes P, Shulaev V. A systems biology study of two distinct growth phases of Saccharomyces cerevisiae cultures. Current Genomics. 2004;5:649–663.
Monteiro-Vitorello CB, Camargo LE, Van Sluys MA, et al. The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli. Mol Plant Microbe Interact. 2004;17:827–836. http://www.ncbi.nlm.nih.gov/pubmed/15305603
Monteiro-Vitorello CB, Camargo LEA, Van Sluys MA, et al. The genome sequence of the Gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli. Molecular Plant-Microbe Interactions. 2004;17:827–836.
Mortveit HS, Reidys CM. Neutral evolution and mutation rates of sequential dynamical systems. Advances in Complex Systems. 2004;7:395–418.
Mozumder P, Marathe A. Gains from an integrated market for tradable renewable energy credits. Ecological Economics. 2004;49:259–272.
Nascimento AL, Ko AI, Martins EA, et al. Comparative genomics of two Leptospira interrogans serovars reveals novel insights into physiology and pathogenesis. J Bacteriol. 2004;186:2164–2172. http://www.ncbi.nlm.nih.gov/pubmed/15028702
Nascimento ALTO, Ko AI, Martins EAL, et al. Comparative Genomics of Two Leptospira interrogans Serovars Reveals Novel Insights into Physiology and Pathogenesis. J. Bacteriol.. 2004;186:2164–2172. http://jb.asm.org/cgi/content/abstract/186/7/2164
Setubal JC. Bioinformatics. In: Mir L, ed. Genomics. Editora Atheneu; 2004:105–118.
Setubal JC, da Silva ACR. Genomic approaches to the study of plant pathogenic bacteria. In: Goodman RM, ed. Encyclopedia of Plant and Crop Science.; 2004:524–526.
Thompson LW, Hogan KT, Caldwell JA, et al. Preventing the spontaneous modification of an HLA-A2-restricted peptide at an N-terminal glutamine or an internal cysteine residue enhances peptide antigenicity. J Immunother. 2004;27:177–183. http://www.ncbi.nlm.nih.gov/pubmed/15076134
Tripp JL, Mortveit HS, Nassr MS, Hansson AA, Gokhale M. Acceleration of traffic simulation on reconfigurable hardware.; 2004. Proceedings of MAPLD04.
Tzafrir I, Pena-Muralla R, Dickerman A, et al. Identification of genes required for embryo development in Arabidopsis. Plant Physiology. 2004;135:1206–1220.
Wang C, Wang D, Zhou Q. Colonization and persistence of a plant growthpromoting bacterium Pseudomonas fluorescens strain CS85, on roots of cotton seedlings. Canadian Journal of Microbiology. 2004;50:475–481.
Wood DW, Setubal JC, Nester EW. Genome sequence analysis of prokaryotic plant pathogens. In: Gillings M, Holmes A, eds. Plant microbiology. Oxford, UK: BIOS Scientific Publishers; 2004:223–241.
A GHR, Pertsemlidis. Applied Computational Biology. BioSilico. 2003.
A GHR, Pertsemlidis. Applied Computational Biology. BioSilico. 2003.
Barrett C, Cook D, Faber V, et al. Statistical Analysis of Algorithms: A Case Study of Market-Clearing Mechanisms in the Power Industry. Journal of Graph Algorithms and Applications (JGAA). 2003;7:3–31.
Barrett C, Cook D, Faber V, et al. Statistical Analysis of Algorithms: A Case Study of Market-Clearing Mechanisms in the Power Industry. Journal of Graph Algorithms and Applications (JGAA). 2003;7:3–31.
Barrett C, Cook D, Faber V, et al. Statistical Analysis of Algorithms: A Case Study of Market-Clearing Mechanisms in the Power Industry. Journal of Graph Algorithms and Applications (JGAA). 2003;7:3–31.
Barrett C, Drozda M, Marathe A, Marathe M. Analyzing interaction between network protocols, topology and traffic in wireless radio networks. New Orleans, Louisiana; 2003:1760–1766. Proceedings of IEEE Wireless Communications and Networking Conference (WCNC) 3. http://www.sim.uni-hannover.de/~drozda/papers/wcnc_2003.pdf
Barrett C, Drozda M, Marathe A, Marathe M. Analyzing interaction between network protocols, topology and traffic in wireless radio networks. New Orleans, Louisiana; 2003:1760–1766. Proceedings of IEEE Wireless Communications and Networking Conference (WCNC) 3. http://www.sim.uni-hannover.de/~drozda/papers/wcnc_2003.pdf
Barrett C, Drozda M, Marathe A, Marathe M. Analyzing interaction between network protocols, topology and traffic in wireless radio networks. New Orleans, Louisiana; 2003:1760–1766. Proceedings of IEEE Wireless Communications and Networking Conference (WCNC) 3. http://www.sim.uni-hannover.de/~drozda/papers/wcnc_2003.pdf
Barrett C, Eidenbenz S, Kroc L, Marathe M, Smith J. Parametric probabilistic sensor network routing. San Diego, California; 2003:122–131. Proceedings of the 2nd ACM International Conference on Wireless Sensor Networks and Applications.
Barrett C, Eidenbenz S, Kroc L, Marathe M, Smith J. Parametric probabilistic sensor network routing. San Diego, California; 2003:122–131. Proceedings of the 2nd ACM International Conference on Wireless Sensor Networks and Applications.
Barrett C, Hunt III HB, Marathe M, Ravi R, Rosenkrantz D, Stearns R. Reachability problems for sequential dynamical systems with threshold functions. Theoretical Computer Science. 2003;295:41–64.
Barrett C, Hunt III HB, Marathe M, Ravi R, Rosenkrantz D, Stearns R. Reachability problems for sequential dynamical systems with threshold functions. Theoretical Computer Science. 2003;295:41–64.
Barrett C, Hunt H, Marathe M, Ravi SS, Rosenkrantz D, Stearns R. Predecessor and permutation existence problems for sequential dynamical systems. In: Morvan M, Rmila ric, eds. Lyon, France. Technical Report No: LA-UR-02-180, Los Alamos National Laboratory; 2003:69–80. Proceedings of Discrete Models for Complex Systems, DMCS'03. http://www.dmtcs.org/proceedings/html/dmAB0106.abs.html
Barrett C, Hunt H, Marathe M, Ravi SS, Rosenkrantz D, Stearns R. Predecessor and permutation existence problems for sequential dynamical systems. In: Morvan M, Rmila ric, eds. Lyon, France. Technical Report No: LA-UR-02-180, Los Alamos National Laboratory; 2003:69–80. Proceedings of Discrete Models for Complex Systems, DMCS'03. http://www.dmtcs.org/proceedings/html/dmAB0106.abs.html
Barrett C, Marathe M, Engelhart D, Sivasubramaniam A. Approximate Connectivity Graph Generation in Mobile Ad Hoc Radio Networks. Orlando, Florida: IEEE Computer Society, Orlando, Florida; 2003:81–88. special issue of Journal of Systems and Software 73:63-74, and Proceedings of the 36th annual sympos 2003.
Barrett C, Marathe M, Engelhart D, Sivasubramaniam A. Approximate Connectivity Graph Generation in Mobile Ad Hoc Radio Networks. Orlando, Florida: IEEE Computer Society, Orlando, Florida; 2003:81–88. special issue of Journal of Systems and Software 73:63-74, and Proceedings of the 36th annual sympos 2003.
Barrett CL, Mortveit HS, Reidys CM. ETS IV: Sequential dynamical systems: fixed points, invertibility and equivalence. Applied Mathematics and Computation. 2003;134:153–171.
Barrett CL, Mortveit HS, Reidys CM. ETS IV: Sequential dynamical systems: fixed points, invertibility and equivalence. Applied Mathematics and Computation. 2003;134:153–171.
Burch C, Carr R, Krumke S, Marathe M, Phillips C, Sundberg E. A decomposition-based pseudoapproximation algorithm for network flow inhibition. In: Network Interdiction and Stochastic Integer Programming. Springer US; 2003:51–68. Operations Research/Computer Science Interfaces Series 22.
http://isbn.nu/978-1-4020-7302-1
Digiampietri LA, Medeiros CB, Setubal JC. A data model for comparative genomics. Revista Tecnologia da Informa. 2003;3(2).
Eidenbenz S, Kumar VSA, Zust S. Equilibria in Topology control games for ad hoc networks.; 2003. Proceedings of the Workshop on Discrete Algorithms and Methods for Mobile Computing and Communicatio.
Freyer G, Sorensen P, Kuhn C, Weikard R, Hoeschele I. Search for pleiotropic QTL on chromosome BTA6 affecting yield traits of milk production. Journal of Dairy Science. 2003;86:999–1008.
Garner HR. Instrumentation for Genome Analysis (and beyond) based on the TI Digital Micromirror Device. Dallas, TX; 2003. proceedings of the IEEE International Reliability Physics Symposium.
Garner HR. Instrumentation for Genome Analysis (and beyond) based on the TI Digital Micromirror Device. Dallas, TX; 2003. proceedings of the IEEE International Reliability Physics Symposium.
Hirsch AM, Bauer WD, Bird DM, Cullimore J, Tyler B, Yoder JI. Molecular Signals and Receptors: Controlling Rhizosphere Interactions between Plants and Other Organisms. Ecology. 2003;84:858–868. http://www.jstor.org/stable/3108029
Hoops S, de la Fuente A, Mendes P. Partial Estimation of the Jacobian from Time Course Data. Heidelberg, Germany; 2003:93–98. 3rd Workshop on Computation of Biochemical Pathways and Genetic Networks.
Hoops S, Eckart JD, Sobral BWS. Integration and Interoperation in Life Sciences: Examples and Challenges. New Generation Computing. 2003;22.
Hucka M, Finney A, Sauro HM, et al. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics. 2003;19:524–531.
Huebschman ML MB and Garner HR. Dynamic Holographic 3-D Image Projection. Optics Express. 2003;11:437–445.
Huebschman ML MB and Garner HR. Dynamic Holographic 3-D Image Projection. Optics Express. 2003;11:437–445.
Jarrah AS, Laubenbacher R, Romanovski V. The Sibirsky component of the center variety of polynomial differential systems. Journal of Symbolic Computation. 2003;35:577–589.
Jun S, Marathe A, Shawky H. Liquidity and Stock Returns in Market Returns. Emerging Market Reviews. 2003;4:1–24.
Kakko S, Kelloniemi J, von Rohr P, et al. ATP-binding cassette transporter A1 locus is not a major determinant of HDL-C levels in a population at high risk for coronary heart disease. Atherosclerosis. 2003;166:285–290.
Krumke S, Liu R, Lloyd EL, Marathe M, Ramanathan R, Ravi R. Topology control problems under symmetric and asymmetric thresholds. In: Barbeau M, Kranakis E, eds. Proceedings of International Conference on Ad hoc and Wireless Networks (ADHOC-NOW'03), Lecture Notes in Computer Science. Vol. 2865. Montreal, Canada: Springer Berlin/Heidelberg; 2003:187–198. http://www.eecis.udel.edu/~elloyd/papers.d/ad03.pdf
Laubenbacher R, Pareigis B. Decomposition and simulation of sequential dynamical systems. Advances in Applied Mathematics. 2003;30:655–678.
Li XJ, Brazhnik O, Kamal A, et al. Databases and Visualization for Metabolomics. In: Harrigan G, Goodacre R, eds. Metabolite Profiling: Its Role in Biomarker Discovery and Gene Function Analysis. Dordrecht: Kluwer Academic Publishers; 2003:293–309.
Marathe A, Shawky H. Structural Relation Between Mortgage and Market Interest Rates. Journal of Business Finance and Accounting. 2003;30:1235–1251.
Martins AM, Mendes P. The Saccharomyces cerevisiae response to oxidative stress: integrative study on the role of the glyoxalase pathway. Yeast. 2003;20:S177.
McInerney T, Johnson EJ, Mukhopadhyay B, Borthwick A. Analysing 2-D gels at High Throughput, Data mining with Progenesis Discovery Informatics Tool. Genetic Engineering News. 2003;23:31–32,36.
Moles CG, Mendes P, Banga JR. Parameter estimation in biochemical pathways: A comparison of global optimization methods. Genome Research. 2003;13:2467–2474.
Pertsemlidis A PN and Garner HR. Text comparison based on dynamic programming. Kauai, Hawaii; 2003. Proceeding of the Pacific Symposium on Biocomputing.
Piazza JP, Setubal JC. New ways for automatic detection of contaminants in EST projects. Revista Tecnologia da Informa. 2003;3(2).
Setubal JC. Genetic Science and Digital Structure. Pesquisa FAPESP. 2003:37.
Shawky H, Marathe A, Barrett C. A first look at the empirical relation between spot and future electricity prices in the United States. Journal of Futures Market. 2003;23:931–955.
Shawky H, Marathe A, Barrett C. A first look at the empirical relation between spot and future electricity prices in the United States. Journal of Futures Market. 2003;23:931–955.
Sumner LW, Mendes P, Dixon RA. Plant metabolomics: large-scale phytochemistry in the functional genomics era. Phytochemistry. 2003;62:817–836.
Tzafrir I, Dickerman A, Brazhnik O, et al. The Arabidopsis SeedGenes Project. Nucleic Acids Research. 2003;31:90–93.
Van Sluys MA, de Oliveira MC, Monteiro-Vitorello CB, et al. Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa. J Bacteriol. 2003;185:1018–1026. http://www.ncbi.nlm.nih.gov/pubmed/12533478
Adasi K, Hemingway J, McCarroll L. The extend of pyrethroid resistance in populations of sensu stricto from Ghana. Trans R Soc Trop Med Hyg. 2002;97:625.
Angenstein F, Evans AM, Settlage RE, et al. A receptor for activated C kinase is part of messenger ribonucleoprotein complexes associated with polyA-mRNAs in neurons. J Neurosci. 2002;22:8827–8837. http://www.ncbi.nlm.nih.gov/pubmed/12388589
Barrett C, Bisset K, Jacob R, Konjevod G, Marathe M. An experimental analysis of a routing algorithm for realistic transportation networks. Rome, Italy; 2002. Proceedings of European Symposium on Algorithms (ESA).
Barrett C, Bisset K, Jacob R, Konjevod G, Marathe M. An experimental analysis of a routing algorithm for realistic transportation networks. Rome, Italy; 2002. Proceedings of European Symposium on Algorithms (ESA).
Barrett C, Bisset K, Jacob R, Konjevod G, Marathe M. An experimental analysis of a routing algorithm for realistic transportation networks. Rome, Italy; 2002. Proceedings of European Symposium on Algorithms (ESA).
Barrett C, Drozda M, Marathe A, Marathe M. Characterizing the interaction between routing and Mac protocols in ad-hoc networks. Lausanne, Switzerland; 2002:92–103. Proceedings of 3rd ACM International Symposium on Mobile Ad Hoc Networking and Computing (Mobihoc). http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.5.4305
Barrett C, Drozda M, Marathe A, Marathe M. Characterizing the interaction between routing and Mac protocols in ad-hoc networks. Lausanne, Switzerland; 2002:92–103. Proceedings of 3rd ACM International Symposium on Mobile Ad Hoc Networking and Computing (Mobihoc). http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.5.4305
Barrett C, Drozda M, Marathe A, Marathe M. Characterizing the interaction between routing and Mac protocols in ad-hoc networks. Lausanne, Switzerland; 2002:92–103. Proceedings of 3rd ACM International Symposium on Mobile Ad Hoc Networking and Computing (Mobihoc). http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.5.4305
Barrett C, Eubank S, Marathe M, Mortveit H, Reidys C. Science and engineering of large scale socio-technical simulations. In: Wie CR eds, ed. San Antonio, Texas; 2002. Proceedings of 1st International Conference on Grand Challenges in Simulations held as a part of Wes. http://www.thesimguy.com/GC/papers/WMC02/G083_MARATHE.pdf
Barrett C, Eubank S, Marathe M, Mortveit H, Reidys C. Science and engineering of large scale socio-technical simulations. In: Wie CR eds, ed. San Antonio, Texas; 2002. Proceedings of 1st International Conference on Grand Challenges in Simulations held as a part of Wes. http://www.thesimguy.com/GC/papers/WMC02/G083_MARATHE.pdf
Barrett C, Eubank S, Marathe M, Mortveit H, Reidys C. Science and engineering of large scale socio-technical simulations. In: Wie CR eds, ed. San Antonio, Texas; 2002. Proceedings of 1st International Conference on Grand Challenges in Simulations held as a part of Wes. http://www.thesimguy.com/GC/papers/WMC02/G083_MARATHE.pdf
Barrett C, Eubank S, Marathe M, Mortveit H, Reidys C. Science and engineering of large scale socio-technical simulations. In: Wie CR eds, ed. San Antonio, Texas; 2002. Proceedings of 1st International Conference on Grand Challenges in Simulations held as a part of Wes. http://www.thesimguy.com/GC/papers/WMC02/G083_MARATHE.pdf
Barrett C, Marathe M, Engelhart D, Sivasubramaniam A. Analyzing the short-term fairness of IEEE 802.11 in wireless multi-hop radio networks. Fort Worth, Texas; 2002. Proceedings of the 10th IEEE International Symposium on Modeling, Analysis, and Simulation of Comput. http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1167070
Barrett C, Marathe M, Engelhart D, Sivasubramaniam A. Analyzing the short-term fairness of IEEE 802.11 in wireless multi-hop radio networks. Fort Worth, Texas; 2002. Proceedings of the 10th IEEE International Symposium on Modeling, Analysis, and Simulation of Comput. http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1167070
Barrett C, Marathe M, Smith J, Ravi SS. A mobility and traffic generation framework for modeling and simulating ad hoc communication networks. Madrid, Spain: ACM Press; 2002:122–126. Proceedings of the 2002 ACM Symposium on Applied computing.
Barrett C, Marathe M, Smith J, Ravi SS. A mobility and traffic generation framework for modeling and simulating ad hoc communication networks. Madrid, Spain: ACM Press; 2002:122–126. Proceedings of the 2002 ACM Symposium on Applied computing.
Barrett CL, Drozda M, Marathe M. A comparative experimental study of media access protocols for wireless radio networks. Orlando, Florida; 2002:405–411. Proceedings of Wireless Communications and Networking Conference (WCNC) 1.
Barrett CL, Drozda M, Marathe M. A comparative experimental study of media access protocols for wireless radio networks. Orlando, Florida; 2002:405–411. Proceedings of Wireless Communications and Networking Conference (WCNC) 1.
Barrett CL, Mortveit HS, Reidys C. Sequential dynamical systems. Tokyo, Japan; 2002:167–169. In Artificial Life and Robotics, Proceedings of the Sixth International Symposium on Artificial Life 6.
Barrett CL, Mortveit HS, Reidys C. Sequential dynamical systems. Tokyo, Japan; 2002:167–169. In Artificial Life and Robotics, Proceedings of the Sixth International Symposium on Artificial Life 6.
Bassaganya-Riera J Hontecillas R. Wannemuehler M.J. Nutritional impact of conjugated linoleic acid: a model funtional foo ingredient. In Vitro Cellular and Developmental Biology – Plant. 2002;38:241–246.
Borer LL, Russell JG, Settlage RE, Bryant RG. Experiments with tris(ethylenediamine)cobalt(III) compounds: Co-59 NMR and the resolution of enantiomeric [Co(en)(3)](3+) ion and analysis by formation of diastereomeric ion pairs. Journal of Chemical Education. 2002;79:494–497.
Brazhnik P, de la Fuente A, Mendes P. Gene networks: how to put the function in genomics. Trends in Biotechnology. 2002;20:467–472.
de la Fuente A, Brazhnik P, Mendes P. Linking the genes: inferring quantitative gene networks from microarray data. Trends in Genetics. 2002;18:395–398.
de la Fuente A, Mendes P. Quantifying gene networks with regulatory strengths. Molecular Biology Reports. 2002;29:73–77.
de la Fuente A, Snoep JL, Westerhoff HV, Mendes P. Metabolic control in integrated biochemical systems. European Journal of Biochemistry. 2002;269:4399–4408.
Doddi S, Marathe M, Moret B. Point set labeling with specified positions. International Journal of Computational Geometry and Applications. 2002;12:29–66.
Du F-X, Sorensen P, Thaller G, Hoeschele I. Joint linkage disequilibrium and linkage mapping of quantitative trait loci. Proceedings of the 7th World Congress of Genetics Applied to Livestock Production. 2002;32:661–668.
Flood EM, Tang F, Horvath MM, Pertsemlidis A, Garner HR. SNPCEQer: Detecting SNPs in sequences generated by the Beckman CEQTM2000 DNA Analysis System. Biotechniques. 2002;33:814–822.
Flood EM, Tang F, Horvath MM, Pertsemlidis A, Garner HR. SNPCEQer: Detecting SNPs in sequences generated by the Beckman CEQTM2000 DNA Analysis System. Biotechniques. 2002;33:814–822.
Freyer G, Kuhn C, Weikard R, Zhang Q, Mayer M, Hoeschele I. Multiple QTL on chromosome six in dairy cattle affecting yield and content traits. Journal of Animal Breeding and Genetics. 2002;119:69–82.
Hoops S, Chen D, Mendes P. High Performance Computing for Biochemical Network Simulations, in High Performance Computing. San Diego, CA; 2002:16–20. The Society for Modeling and Simulation International.
Hunt III HB, Marathe MV, Radhakrishnan V, Ravi SS, Rosenkrantz DJ, Stearns RE. Parallel approximation schemes for a class of planar and near planar combinatorial optimization problems. Information and Computation. 2002;173:40–63.
Jeoffrey Schageman AP and HG. Shotgun assembly with the CEQ2000XL using Phred, Phrap and Consed. Beckman-Coulter. 2002.
Jeoffrey Schageman AP and HG. Shotgun assembly with the CEQ2000XL using Phred, Phrap and Consed. Beckman-Coulter. 2002.
Kumar VSA, Marathe M. Improved Results for Stackelberg Scheduling Strategies. Malaga, Spain; 2002:776–787. Proceedings of the 29th International Colloquium on Automata, Languages and Programming, 2002 (ICALP 2380.
Kumar VSA, Marathe M. Improved Results for Stackelberg Scheduling Strategies. Malaga, Spain; 2002:776–787. Proceedings of the 29th International Colloquium on Automata, Languages and Programming, 2002 (ICALP 2380.
Li XJ, Brazhnik O, Kamal A, et al. Databases and visualization for metabolomics. In: Harrigan GRG, ed. Metabolic profiling: Its role in biomarker discovery and gene function analysis. Amsterdam: Kluwer Academic Publishing; 2002.
Luebke KJ BRP Mittelman D Garner HR. Digital Optical Chemistry: A Novel System for the Rapid Fabrication of Custom Oligonucleotide Arrays. In: Kordal R UA Law W, ed. Microfabricated Sensors, Application of Optical Technology for DNA Analysis. Washington, D.C.: American Chemical Society; 2002.
MacGregor T, Bhattacharyya M, Tyler BM, Bhat R, Schmitthenner AF, Gijzen M. Genetic and physical mapping of Avr1a in Phytophthora sojae. Genetics. 2002:949. Caras Galadhon: Wordperfect
Marathe M. Routing in very large multi-modal time dependent networks: Theory and practice. Malaga, Spain; 2002. Proceedings of Algorithmic Methods and Models for Optimization of Railways (ATMOS 2002).
Marathe M. Towards a predictive computational complexity theory. Malaga, Spain: Springer-Verlag; 2002:22–31. Proceedings of the 29th International Colloquium on Automata, Languages and Programming 2380.
Mohring R, Barrett C, Bisset K, Jacob R, Konjevod G, Marathe M. Classical and Contemporary Shortest Path Problems in Road Networks: Implementation and Experimental Analysis of the TRANSIMS Router. In: Algorithms ESE. Springer Berlin / Heidelberg: Springer; 2002:313–319. Lecture Notes in Computer Science 2461. http://www.springerlink.com/content/80bahx1f2gkf5a63/
Mohring R, Barrett C, Bisset K, Jacob R, Konjevod G, Marathe M. Classical and Contemporary Shortest Path Problems in Road Networks: Implementation and Experimental Analysis of the TRANSIMS Router. In: Algorithms ESE. Springer Berlin / Heidelberg: Springer; 2002:313–319. Lecture Notes in Computer Science 2461. http://www.springerlink.com/content/80bahx1f2gkf5a63/
Mohring R, Barrett C, Bisset K, Jacob R, Konjevod G, Marathe M. Classical and Contemporary Shortest Path Problems in Road Networks: Implementation and Experimental Analysis of the TRANSIMS Router. In: Algorithms ESE. Springer Berlin / Heidelberg: Springer; 2002:313–319. Lecture Notes in Computer Science 2461. http://www.springerlink.com/content/80bahx1f2gkf5a63/
Pang J N. Ginanni A.R. Dongr. Biomarker Discovery in Urine by Proteomics. J. Proteome Res.. 2002;12:183–188.
Schageman JJ, Basit M, Gallardo TD, Garner HR, Shohet RV. MarC-V: A spreadsheet-based tool for analysis, normalization, and visualization of single cDNA microarray experiments. Biotechniques. 2002;32:338–344.
Stimmer H, Arnold W, Schwaiger M, Laubenbacher C. Magnetic resonance imaging and high-resolution computed tomography in the otospongiotic phase of otosclerosis. Orl-Journal for Oto-Rhino-Laryngology and Its Related Specialties. 2002;64:451–453.
Stricker C, Schelling M, Du F-X, Hoeschele I, Fern. A comparison of efficient genotype samplers for complex pedigrees and multiple linked loci.; 2002:637–644. Proceedings of the 7th World Congress on Genetics Applied to Livestock Production 32.
von Rohr P, Hoeschele I. Bayesian QTL mapping using skewed Student-t distributions. Genetics Selection Evolution. 2002;34:1–21.
Adasi K, Boakye D, Wilson M. Insecticide resistance in Anopheles gambia sensu stricto and its implications for malaria control in Ghana. Harare, Zimbabwe; 2001. Multilaterial Initiative on Malaria meeting on Insecticide Resistance in Malaria Vectors.
Baginsky S, Shteiman-Kotler A, Liveanu V, et al. Chloroplast PNPase exists as a homo-multimer enzyme complex that is distinct from the Escherichia coli degradosome. Rna. 2001;7:1464–1475. http://www.ncbi.nlm.nih.gov/pubmed/11680851
Barcelo H, Kramer X, Laubenbacher R, Weaver C. Foundations of a connectivity theory for simplicial complexes. Advances in Applied Mathematics. 2001;26:97–128.
Barrett C, Cook D, Hicks G, et al. Experimental Analysis of Algorithms for Bilateral-Contract Clearing Mechanisms Arising in Deregulated Power Industry. In: Hartmanis J, Leeuwen J van, eds. Proceedings of the 5th International Workshop on Algorithm Engineering, Lecture Notes in Computer Science. Springer Berlin / Heidelberg; 2001:172–184. Lecture Notes in Computer Science 2141.
http://isbn.nu/3540425004
Barrett C, Cook D, Hicks G, et al. Experimental Analysis of Algorithms for Bilateral-Contract Clearing Mechanisms Arising in Deregulated Power Industry. In: Hartmanis J, Leeuwen J van, eds. Proceedings of the 5th International Workshop on Algorithm Engineering, Lecture Notes in Computer Science. Springer Berlin / Heidelberg; 2001:172–184. Lecture Notes in Computer Science 2141.
http://isbn.nu/3540425004
Barrett C, Cook D, Hicks G, et al. Experimental Analysis of Algorithms for Bilateral-Contract Clearing Mechanisms Arising in Deregulated Power Industry. In: Hartmanis J, Leeuwen J van, eds. Proceedings of the 5th International Workshop on Algorithm Engineering, Lecture Notes in Computer Science. Springer Berlin / Heidelberg; 2001:172–184. Lecture Notes in Computer Science 2141.
http://isbn.nu/3540425004
Barrett C, Hunt III HB, Marathe M, Ravi S, Rosenkrantz D, Stearns R. Analysis problems for sequential dynamical systems and communicating state machines. In: Mathematical Foundations of Computer Science, Lecture Notes in Computer Science. Vol. 2136.; 2001:159–172. http://www.springerlink.com/content/m78gaa07pf180vrn/
Barrett C, Hunt III HB, Marathe M, Ravi S, Rosenkrantz D, Stearns R. Analysis problems for sequential dynamical systems and communicating state machines. In: Mathematical Foundations of Computer Science, Lecture Notes in Computer Science. Vol. 2136.; 2001:159–172. http://www.springerlink.com/content/m78gaa07pf180vrn/
Barrett C, Hunt III HB, Marathe M, et al. Gardens of Eden and Fixed Points in Sequential Dynamical Systems. Paris, France; 2001:95–110. Proceedings of International Conference on Discrete Models in Combinaorics, Computation and Geometry.
Barrett C, Hunt III HB, Marathe M, et al. Gardens of Eden and Fixed Points in Sequential Dynamical Systems. Paris, France; 2001:95–110. Proceedings of International Conference on Discrete Models in Combinaorics, Computation and Geometry.
Barrett C, Marathe M, Reidys C. Commercial prospects for mobile communications from the developments in large scale infrastructure simulation technology. CRADA Agreement with Motorola. 2001;Final Report.
Barrett C, Marathe M, Reidys C. Commercial prospects for mobile communications from the developments in large scale infrastructure simulation technology. CRADA Agreement with Motorola. 2001;Final Report.
Barrett CL, Mortveit HS, Reidys CM. Factorization of simulations.; 2001:245–252. In Applied Simulation and Modeling, Proceedings of the IASTED International Conference.
Barrett CL, Mortveit HS, Reidys CM. Factorization of simulations.; 2001:245–252. In Applied Simulation and Modeling, Proceedings of the IASTED International Conference.
Doddi S, Marathe A, Ravi SS, Torney D. Discovery of Association Rules in Medical Data. Medical Informatics and Internet in Medicine. 2001;26:25–33.
Dongre AR G. Opiteck W.L. Cosand and S.A. Hefta. Proteomics in the Post-Genome Age. Biopolymers Pept Sci. 2001;60:206–211.
Duncan C, Kobourov S, Kumar VSA. Optimal constrained graph exploration.; 2001:807–814. Proceedings of the 12th ACM Symposium on DiscreteAlgorithms (SODA).
Eubank S. Transportation Networks: Dynamics and Simulation. Posttsdam; 2001:139–145. Proceedings of the 6th Experimental Chaos Conference.
Gillespie JJ, Duckett CN, Kjer KM. Identification of a gene region that gives good phylogenetic signal for determining high level divergences within alticine and galerucine chrysomelids. Chrysomela. 2001;40/41:10–11.
Huala E, Dickerman AW, Garcia-Hernandez M, et al. The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. Nucleic Acids Res. 2001;29:102–105. http://www.ncbi.nlm.nih.gov/pubmed/11125061
Huala E, Dickerman AW, Garcia-Hernandez M, et al. The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. Nucleic Acids Research. 2001;29:102–105.
Hunt III HB, Marathe M, Stearns R. Strongly-local reductions and the complexity/efficient approximability of algebra and optimization on abstract algebraic structures. London, Ontario, Canada: ACM Press; 2001. Proceedings of the 2001 international symposium on Symbolic and algebraic computation.
Hunt III HB, Marathe MV, Stearns RE. Complexity and Approximability of Quantified and Stochastic Constraint Satisfaction Problems. Boston, Massachusetts; 2001:130–143. Proceedings of Workshop on theory and Applications of Satisfiability Testing, appears as Electronic 9.
Krysta P, Kumar VSA. Approximation algorithms for minimum size 2-connectivity problems. Vol. 2010. Proceedings of the 18th International Symposium on Theoretical Aspects of Computer Science (STACS): Springer; 2001:431–442.
Kumar VSA, Hariharan R. Markovian Coupling vs Conductance for the Jerrum-Sinclair Chain. Random Structures and Algorithms. 2001;181:1–17.
Laubenbacher R, McGrath G, Pengelley D. Lagrange and the solution of numerical equations. Historia Mathematica. 2001;28:220–231.
Laubenbacher R, Pareigis B. Equivalence relations on finite dynamical systems. Advances in Applied Mathematics. 2001;26:237–251.
Martins AM, Mendes P, Cordeiro C, Freire AP. In situ kinetic analysis of glyoxalase I and glyoxalase II in Saccharomyces cerevisiae. European Journal of Biochemistry. 2001;268:3930–3936.
Mendes P, Kell DB. MEG (Model Extender for Gepasi): a program for the modelling of complex, heterogeneous, cellular systems. Bioinformatics. 2001;17:288–289.
Mukhopadhyay B, Purwantini E, Kreder CL, Wolfe RS. Oxaloacetate synthesis in the methanarchaeon Methanosarcina barkeri: pyruvate carboxylase genes and a putative Escherichia coli-type bifunctional biotin protein ligase gene (bpl/birA) exhibit a unique organization. J Bacteriol. 2001;183:3804–3810. http://www.ncbi.nlm.nih.gov/pubmed/11371547
Siepel A, Farmer A, Tolopko A, et al. ISYS: a decentralized, component-based approach to the integration of heterogeneous bioinformatics resources. Bioinformatics. 2001;17:83–94. http://www.ncbi.nlm.nih.gov/pubmed/11222265
Sobral BWS, Mangalam H, Siepel A, Mendes P, Pecherer R, McLaren G. Bioinformatics for rice resources. In: Rice Biotechnology: Improving Yield, Stress Tolerance and Grain Quality.; 2001:59–84. Novartis Foundation Symposium 236.
Wang C, Ramette A, Punjasamarnwong P, Zala M, Natsch A, Mo. Cosmopolitan distribution of phlD-containing dicotyledonous crop-associated biocontrol pseudomonads of worldwide origin. FEMS Microbiology Ecology. 2001;37:105–116. http://dx.doi.org/10.1111%2Fj.1574-6941.2001.tb00858.x
Barrett C, Eubank S, Marathe M, Mortveit H, Reidys C. Science and engineering of large scale socio-technical simulations. In: Vakilzadian H, Wie CR, Wie CR eds, eds. San Diego, California; 2000. Proceedings of 2000 ICSEE Western MultiConference on Computer Simulation (ICSEE/WMC'2000). http://ndssl.vbi.vt.edu/Publications/ScienceAndEngineering_Barrett.pdf
Barrett C, Eubank S, Marathe M, Mortveit H, Reidys C. Science and engineering of large scale socio-technical simulations. In: Vakilzadian H, Wie CR, Wie CR eds, eds. San Diego, California; 2000. Proceedings of 2000 ICSEE Western MultiConference on Computer Simulation (ICSEE/WMC'2000). http://ndssl.vbi.vt.edu/Publications/ScienceAndEngineering_Barrett.pdf
Barrett C, Eubank S, Marathe M, Mortveit H, Reidys C. Science and engineering of large scale socio-technical simulations. In: Vakilzadian H, Wie CR, Wie CR eds, eds. San Diego, California; 2000. Proceedings of 2000 ICSEE Western MultiConference on Computer Simulation (ICSEE/WMC'2000). http://ndssl.vbi.vt.edu/Publications/ScienceAndEngineering_Barrett.pdf
Barrett C, Eubank S, Marathe M, Mortveit H, Reidys C. Science and engineering of large scale socio-technical simulations. In: Vakilzadian H, Wie CR, Wie CR eds, eds. San Diego, California; 2000. Proceedings of 2000 ICSEE Western MultiConference on Computer Simulation (ICSEE/WMC'2000). http://ndssl.vbi.vt.edu/Publications/ScienceAndEngineering_Barrett.pdf
Barrett CL, Bush BW, Kopp S, Mortveit HS, Reidys CM. Sequential Dynamical Systems and Applications to Simulations. IEEE Computer Society; 2000. Proceedings of the 33rd Annual Simulation Symposium.
Barrett CL, Bush BW, Kopp S, Mortveit HS, Reidys CM. Sequential Dynamical Systems and Applications to Simulations. IEEE Computer Society; 2000. Proceedings of the 33rd Annual Simulation Symposium.
Cattani E, Laubenbacher RC. Special issue on symbolic computation in algebra, analysis, and geometry – Foreword of the guest editors. Journal of Symbolic Computation. 2000;29:483.
Cook D, Faber V, Hicks G, Marathe M. Combinatorial Problems Arising in Deregulated Electrical Power Industry: Survey and Future Directions. In: Proc. Approximation and Complexity in Numerical Optimization: Continuous and Discrete Problems. Kluwer Academic Publishers; 2000:138–162.
Crotzer VL, Christian RE, Brooks JM, et al. Immunodominance among EBV-derived epitopes restricted by HLA-B27 does not correlate with epitope abundance in EBV-transformed B-lymphoblastoid cell lines. J Immunol. 2000;164:6120–6129. http://www.ncbi.nlm.nih.gov/pubmed/10843661
Czabarka E, Konjevod G, Marathe M, Percus A, Toney D. Algorithms for Optimizing Production DNA Sequencing. San Francisco, California; 2000:399–408. Proceedings of 11th ACM-SIAM Symposium on Discrete Algorithms (SODA). http://portal.acm.org/citation.cfm?id=338585
Doddi S, Marathe M, Moret B. Point set labeling with specified positions. Hong Kong, China; 2000:182–190. Proceedings of ACM Symposium on Computational Geometry (SoCG).
Doddi S, Marathe M, Ravi R, Taylor D, Widmayer P. Approximation algorithms for clustering to minimize the sum of diameters. Invited paper appears in the special issue of Nordic Journal of Computing, containing selected paper. 2000;7:185–203.
Dongre AR and SAH. Proteomics from a Drug Discovery Persepective. Drug Discovery World. 2000.
Dowell L, Drozda M, Henderson D, Loose V, Marathe M, Roberts D. Scalability of ELISIMS: comprehensive detailed simulation of the electric power industry. Nashville, TN; 2000:393–398. Systems, Man, and Cybernetics, 2000 IEEE International Conference 1.
Hunt III HB, Stearns R, Marathe MV. On the Efficient Approximability of “Hard” Problems: A Survey. In: Approximation and Complexity in Numerical Optimization: Continuous and Discrete Problems. Kluwer Academic Publishers; 2000:308–322. Nonconvex Optimization and Its Applications 42.
http://isbn.nu/978-0-923-6275-3
Konjevod G, Krumke S, Marathe M. Budget constrained minimum cost connected medians. In: Brandes U, Wagner D, eds. Graph-Theoretic Concepts in Computer Science, Lecture Notes in Computer Science. Springer Berlin / Heidelberg; 2000:207–219. Lecture Notes in Computer Science 1928. http://www.springerlink.com/content/xtwcxtw8gg9gl2u3/
Kumar VSA, Arya S, R. H. Hardness of Set Covering with Intersection 1. Vol. 1853. Proceedings of the 27th International Colloquium on Automata, Languages and Programming (ICALP): Lecture Notes in Computer Science; 2000:624–635.
Laubenbacher R, Schlauch K. An algorithm for the Quillen-Suslin Theorem for quotients of polynomial rings by monomial ideals. Journal of Symbolic Computation. 2000;30:555–571.
Laubenbacher RC, Swanson I. Permanental ideals. Journal of Symbolic Computation. 2000;30:195–205.
Liao B HW Epstein CB Butow RA Garner HR. MAD: a suite of tools for microarray data management and processing. BioInformatics. 2000;16:946–947.
Liao B HW Epstein CB Butow RA Garner HR. MAD: a suite of tools for microarray data management and processing. BioInformatics. 2000;16:946–947.
Marathe M, Risenger L, Panconesi A. Experimental analysis of a simple distributed edge coloring algorithm.; 2000. Proceedings of 12th ACM Symposium on Parallel Algorithms and Architectures (SPAA).
Miller GA BY Murphy TH Garner HR. Transparent Electronically Controlled DNA Chips. Biomedical Microdevices. 2000;2:215–220.
Miller GA BY Murphy TH Garner HR. Transparent Electronically Controlled DNA Chips. Biomedical Microdevices. 2000;2:215–220.
Mukhopadhyay B, Purwantini E. Pyruvate carboxylase from Mycobacterium smegmatis: stabilization, rapid purification, molecular and biochemical characterization and regulation of the cellular level. Biochim Biophys Acta. 2000;1475:191–206. http://www.ncbi.nlm.nih.gov/pubmed/10913817
Shabanowitz J, Settlage RE, Marto JA, et al. Sequencing the Primordial Soup. Totowa, NJ: Humana Press; 2000. Mass Spectrometry in Biology and Medicine.
Simpson AJ, Reinach FC, Arruda P, et al. The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and Analysis. Nature. 2000;406:151–159. http://www.ncbi.nlm.nih.gov/pubmed/10910347
Wang C, Edouard K, Glick BR, D. Effect of transferring 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase genes into Pseudomonas fluorescens strain CHA0 and its gacA derivative CHA96 on their growth-promoting and disease-suppressive capacities. Canadian Journal of Microbiology. 2000;46:898–907.
Waugh M, Hraber P, Weller J, et al. The phytophthora genome initiative database: informatics and analysis for distributed pathogenomic research. Nucleic Acids Res. 2000;28:87–90. http://www.ncbi.nlm.nih.gov/pubmed/10592189
Barrett CL, Reidys CM. Elements of a theory of computer simulation I: Sequential CA over random graphs. Appl. Math. Comput.. 1999;98:241–259.
Bassetti F, Davis K, Marathe M, Quinlan DJ, Philip B. Improving cache utilization of linear relaxation methods: Theory and practice. San Francisco, California: Springer-Verlag; 1999. Proceedings of the Third International Symposium on Computing in Object-Oriented Parallel Environmen 1732.
de Oliveira VM, Coutinho HL, Sobral BW, Guimaraes CT, van Elsas JD, Manfio GP. Discrimination of Rhizobium tropici and R. leguminosarum strains by PCR-specific amplification of 16S-23S rDNA spacer region fragments and denaturing gradient gel electrophoresis (DGGE). Lett Appl Microbiol. 1999;28:137–141. http://www.ncbi.nlm.nih.gov/pubmed/10063643
Eubank SG. What makes a simulation useful? [TRANSIMS]. Tokyo; 1999:640–644 vol.4. Proceedings of the IEEE Systems Man and Cybernetics Conference 4.
Hermiller SM, Kramer XH, Laubenbacher RC. Monomial orderings, rewriting systems, and Grobner bases for the commutator ideal of a free algebra. Journal of Symbolic Computation. 1999;27:133–141.
Kamoun S, Hraber P, Sobral B, Nuss D, Govers F. Initial assessment of gene diversity for the oomycete pathogen Phytophthora infestans based on expressed sequences. Fungal Genet Biol. 1999;28:94–106. http://www.ncbi.nlm.nih.gov/pubmed/10587472
Kopp S, Mortveit HS, Reidys CM. Sequential dynamical systems and simulation. Orlando, Florida; 1999:1445. In Proceedings to the Genetic and Evolutionary Computation Conference 2.
Kopp S, Mortveit HS, Reidys CM. Orlando, Florida; 1999:1445.
Kumar VSA, Hariharan R. Markovian Coupling vs Conductance for the Jerrum-Sinclair Chain. Proceedings of the 40th Annual IEEE Symposium on Foundations of Computer Science (FOCS); 1999:241–252.
Marathe A, Shawky H. Categorizing mutual funds using cluster. Advances in Quantitative Analysis of Finance and Accounting. 1999;7:199–211.
Meyers BC, Dickerman AW, Michelmore RW, Sivaramakrishnan S, Sobral BW, Young ND. Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily. Plant J. 1999;20:317–332. http://www.ncbi.nlm.nih.gov/pubmed/10571892
Settlage RE, Christian RE, Hunt DF. Apparatus for structural characterization of biological moieties through HPLC separation. Us; 1999.
Settlage RE, Christian RE, Hunt DF. Methods for structural characterization of biological moieties through HPLC separation. Us; 1999.
Werneck RFF, Setubal JC, da Conceicao AF. Finding minimum congestion spanning trees.; 1999. Algorithm Engineering 1668.
Werneck RFF, Setubal JC, da Conceicao AF. Finding minimum congestion spanning trees. Algorithm Engineering. 1999;1668:60–71.
Barrett C, Jacob R, Marathe M. Formal Language Constrained Path Problems. Stockholm, Sweden: Springer-Verlag; 1998:234–245. Proceedings of the 6th Scandinavian Workshop on Algorithm Theory, Lecture Notes of Computer Science 1432.
Barrett CL, Mortveit HS, Reidys CM. On theoretical issues of computer simulations-sequential dynamical systems. Orlando, Florida; 1998:141–147. Proceedings of World Multiconference on SYSTEMICS, CYBERNETICS and INFORMATICS-SCI 98 4.
Barrett CL, Mortveit HS, Reidys CM. On theoretical issues of computer simulations-sequential dynamical systems. Orlando, Florida; 1998:141–147. Proceedings of World Multiconference on SYSTEMICS, CYBERNETICS and INFORMATICS-SCI 98 4.
Barrett CL, Thord R, Reidys C. Simulations in Decisions Making for Socio-technical Systems. In: Johansoon B, Snickars F, Thord R, eds. Knowledge and Networks in a Dynamic Economy. Springer: Berlin Heidelberg; 1998.
Black E, Eubank S, Kashioka H, Saia J. Reinventing Part-of-Speech Tagging.. 1998;5.
Cherkassky BV, Goldberg AV, Martin P, Setubal JC, Stolfi J. Augment or Push? A computational study of Bipartite Matching and Unit Capacity Maximum Flow Algorithms. ACM Journal of Experimental Algorithmics. 1998;3.
Hunt III HB, Marathe M, Radhakrishnan V, Stearns R. The complexity of planar counting problems. SIAM Journal of Computing. 1998;27:1142–1167.
Jacob C, Peccoud J. Estimation of the parameters of a branching process from migrating binomial observations. Advances in Applied Probability. 1998;30:948–967.
Jacob RR, Nagel K, Marathe MV, Los Alamos National L. A computational study of routing algorithms for realistic transportation networks. Saarbrucken, Germany; 1998. Proceedings of the 2nd Workshop on Algorithmic Engineering.
K. M. O. Review of Scientific Instruments. 1998;Vol. 69.
K. M. O. Review of Scientific Instruments. 1998;Vol. 69.
Kolster M, Laubenbacher RC. On higher class groups of orders. Mathematische Zeitschrift. 1998;228:229–246.
Krumke S, Marathe M, Noltemeier H, Ravi R, Ravi S. Upgrading bottleneck constrained forests. Smolenice-Castle, Slovakia; 1998:215–226. Proceedings of the 24th Workshop in Graph Theoretic Concepts in Computer Science (WG), Lecture Notes 1517.
Krumke S, Marathe M, Ravi R, Ravi S. Approximation algorithms for certain network improvement problems.; 1998:247–268. Proceedings of AMS-DIMACS Volume Series on Discrete Mathematics and Theoretical Computer Science: Wo 40.
Krumke S, Marathe M, Ravi SS. Approximation algorithms for broadcast scheduling in radio networks. Dallas, Texas; 1998. Proceeding of 2nd International Workshop on Discrete Algorithms and Methods for Mobile computing and.
Marathe M, Hunt HB III, Rosenkrantz D, Stearns R. Theory of periodically specified problems: complexity and approximability. In: Proceedings of the Thirteenth Annual IEEE Conference on Computational Complexity. Buffalo, New York; 1998:106–118. http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=694596
Marathe M, Ravi R, Sundaram R. Improved Results for Service Constrained Network Design Problems. In: AMS-DIMACS Volume Series on Discrete Mathematics and Theoretical Computer Science: Workshop on Network Design, Connectivity and Facility Location. Vol. 40.; 1998:269–276.
Marathe MV, Hunt III HB, Stearns RE, Radhakrishnan V. Approximation algorithms for PSPACE-Hard hierarchically and periodically specified problems. SIAM journal on computing. 1998;27:1237–1267.
Nagel K, Stretz P, Pieck M, Leckey S, Donnelly R, Barrett C. TRANSIMS Traffic Flow. Transportation Research Board Annual Meeting. 1998.
Peccoud J. Stochastic Petri nets for genetic networks. M S-Medecine Sciences. 1998;14:991–993.
Purwantini E, Daniels L. Molecular analysis of the gene encoding F420-dependent glucose-6-phosphate dehydrogenase from Mycobacterium smegmatis. J Bacteriol. 1998;180:2212–2219. http://www.ncbi.nlm.nih.gov/pubmed/9555906
Settlage RE, Hendrickson RC, Deacon D, Caldwell JA, Hunt DF, Slingluff CL. A peptide from p68 is an epitope for melanoma reactive cytotoxic T-lymphocytes. Faseb Journal. 1998;12:A476.
Settlage RE, Russo PS, Shabanowitz J, Hunt DF. A novel mu-ESI source for coupling capillary electrophoresis and mass spectrometry: Sequence determination of tumor peptides at the attomole level. Journal of Microcolumn Separations. 1998;10:281–285.
Tobi M E. Darmon P. Rozen M. Baratz M. Lundqvist K. Oberg P. Thomas J. Esteban S. Hefta R. Paxon J. Shively. Shared tumor antigens in colorectal carcinoma and neuroendocrine tumors. Cancer Detection and Prevention. 1998;22:147–152.
Black E, Eubank S, Kashioka H. The Non-Dictionary: Description and Evaluation of a Dictionaryless Semantic and Syntactic Tagger for Unrestricted English Text.; 1997:16–30. Proc. of the Natural Language Processing Association, Kyoto.
Black E, Eubank S, Kashioka H. Probabilistic Parsing of Unrestricted English Text, With A Highly-Detailed Grammar. In: J. Zhou and K. Church eds, ed. Proceedings of the Fifth Workshop on Very Large Corpora,Beijing and Hong Kong.; 1997:16–30.
Doddi S, Marathe M, Mirzaian A, Moret B, Zhu B. Map labeling problems. San Francisco, California; 1997:148–157. Proceedings of 8th ACM-SIAM Symposium on Discrete algorithms (SODA).
Garner HR. Viewpoint: The Human Genome Project: on target for 2006. IEEE Spectrum. 1997;January 1997:99–102.
Garner HR. Viewpoint: The Human Genome Project: on target for 2006. IEEE Spectrum. 1997;January 1997:99–102.
Guimaraes CT, Sills GR, Sobral BW. Comparative mapping of Andropogoneae: Saccharum L. (sugarcane) and its relation to sorghum and maize. Proc Natl Acad Sci U S A. 1997;94:14261–14266. http://www.ncbi.nlm.nih.gov/pubmed/9405600
Honeycutt R, Sobral BW, McClelland M. Polymerase chain reaction (PCR) detection and quantification using a short PCR product and a synthetic internal positive control. Anal Biochem. 1997;248:303–306. http://www.ncbi.nlm.nih.gov/pubmed/9177760
Jacob C, Breton N, Daegelen P, Peccoud J. Probability distribution of the chemical states of a closed system and thermodynamic law of mass action from kinetics: The RNA example. Journal of Chemical Physics. 1997;107:2913–2919.
K. O. Rescuing Corrupted ABI-type gel files. BioTechniques. 1997;Vol. 22:1162–1163.
K. O. Rescuing Corrupted ABI-type gel files. BioTechniques. 1997;Vol. 22:1162–1163.
Krumke S, Marathe M, Noltemeier H, et al. Improving spanning trees by upgrading nodes. Bologona, Italy; 1997:281–291. Proceedings of the 24th International Colloquium on Automata, Languages and Programming (ICALP), Lec 1256.
Krumke S, Noltemeier H, Ravi SS, Marathe M. Compact location problems with budget and communication constraints. Theoretical Computer Science. 1997;181:379–404.
Laubenbacher RC, Woodburn CJ. An algorithm for the Quillen-Suslin theorem for monoid rings. Journal of Pure and Applied Algebra. 1997;117:395–429.
Michalak P, Grzesik J, Rafinski J. Tests for Sexual Incompatibility Between Two Newt Species, Triturus vulgaris and Triturus montandoni: No-Choice Mating Design. Evolution. 1997;51:2045–2050. http://www.jstor.org/stable/2411027
Nagel K, Rickert M, Barrett CL. Large Scale Traffic Simulations. Springer-Verlag; 1997. Selected papers from the Second International Conference on Vector and Parallel Processing.
P. Li CJD D. North P. Schilling G. A. Evans and H. R. Garner. Supercomputing in genomic sequencing: Optimization of BLAST and other sequence algorithms for high speed parallel processing. Scientific Computing and Automation. 1997.
P. Li CJD D. North P. Schilling G. A. Evans and H. R. Garner. Supercomputing in genomic sequencing: Optimization of BLAST and other sequence algorithms for high speed parallel processing. Scientific Computing and Automation. 1997.
P. Li KK C. Davies D. Burbee G. A. Evans and H. R. Garne. PRIMO: A Primer Design Program that Applies Base Quality Statistics for Automated Large-Scale DNA Sequencing. Genomics. 1997;40:476–485.
P. Li KK C. Davies D. Burbee G. A. Evans and H. R. Garne. PRIMO: A Primer Design Program that Applies Base Quality Statistics for Automated Large-Scale DNA Sequencing. Genomics. 1997;40:476–485.
Peccoud J Damour D. Keranen V. MathLink for LabVIEW: a new environment to control and interact with instruments; application to robotics. Innovation In Mathematics. 1997:391–399.
Purwantini E, Gillis TP, Daniels L. Presence of F420-dependent glucose-6-phosphate dehydrogenase in Mycobacterium and Nocardia species, but absence from Streptomyces and Corynebacterium species and methanogenic Archaea. FEMS Microbiol Lett. 1997;146:129–134. http://www.ncbi.nlm.nih.gov/pubmed/8997717
Setubal JC, Meidanis J. Introduction to Computational Molecular Biology. Boston: PWS Publishing Company; 1997.
Arikati S, Dessmark A, Lingas A, Marathe M. Approximation algorithms for maximum two-dimensional pattern matching. Laguna Beach, California: Springer Verlag; 1996:348–360. Proceedings of 7th Annual Symposium on Combinatorial Pattern Matching (CPM) 1075.
Arnold DM, Laubenbacher RC. Finitely generated modules over pullback rings. Journal of Algebra. 1996;184:304–332.
Black E, Eubank S, Kashioka H, Magerman D, Garside R, Leech G. Beyond skeleton parsing: producing a comprehensive large-scale general-English treebank with full grammatical analysis. Copenhagen, Denmark: Association for Computational Linguistics Morristown, NJ, USA; 1996:107–112. Proceedings of the 16th conference on Computational linguistics – Volume 1.
Black E, Eubank S, Kashioka H, Magerman D, Ushioda A. The Non-Dictionary: Towards More Detailed And Robust Part-Of-Speech Tagging.; 1996. Proceedings of the Workshop on Very Large Corpora.
Eubank S, Kashioka H. Merging statistical and rule-based methods using decision trees. France; 1996:182–189. Proceedings of MIDDIM-96, ed. CH. Boitet, LeCol De Porte.
Eubank S, Kashioka H, Black E. A New Approach to Treebank Creation. Tokyo; 1996:265–268. Proc. of the Natural Language Processing Association.
Garner HR. What is Chromosome Walking.; 1996. Scientific American, Ask the Experts.
Garner HR. What is Chromosome Walking.; 1996. Scientific American, Ask the Experts.
Gijzen M, Forster H, Coffey MD, Tyler BM. Cosegregation of Avr4 and Avr6 in Phytophthora sojae. Can. J. Bot.. 1996;74:800–802.
H.R.Garner. Fluorometer to Spectrophotometer Converter. Review of Scientific Instruments. 1996;67.
H.R.Garner. Fluorometer to Spectrophotometer Converter. Review of Scientific Instruments. 1996;67.
Jacob C, Peccoud J. Estimation of the offspring mean for a supercritical branching process from migrating binomial observations. Comptes Rendus De L Academie Des Sciences Serie I-Mathematique. 1996;322:763–768.
Jacob C, Peccoud J. Inference on the initial size of a supercritical branching process from migrating binomial observations. Comptes Rendus De L Academie Des Sciences Serie I-Mathematique. 1996;322:875–880.
Klein AR, Berk H, Purwantini E, Daniels L, Thauer RK. Si-face stereospecificity at C5 of coenzyme F420 for F420-dependent glucose-6-phosphate dehydrogenase from Mycobacterium smegmatis and F420-dependent alcohol dehydrogenase from Methanoculleus thermophilicus. Eur J Biochem. 1996;239:93–97. http://www.ncbi.nlm.nih.gov/pubmed/8706724
Klein ML, McGhee SA, Baranian J, Stevens L, Hefta SA. Role of nonspecific cross-reacting antigen, a CD66 cluster antigen, in activation of human granulocytes. Infect Immun. 1996;64(11):4574–4579. http://www.ncbi.nlm.nih.gov/pubmed/8890209
Krumke S, Noltemeier H, Drangmeister H, Marathe M, Ravi S. Modifying edges of a network to obtain short subgraphs. Italy; 1996:91–121. Proceedings of the 22nd Workshop in Graph Theoretic Concepts in Computer Science (WG).
Laubenbacher RC, Sturmfels B. A normal form algorithm for modules over k[x,y]/(xy). Journal of Algebra. 1996;184:1001–1024.
Marathe M, Ravi R, Sundaram R. Service constrained network design problems. Reykjavik, Iceland; 1996:28–40. Proceedings of the 5th Scandinavian Workshop on Algorithm Theory (SWAT) 1097.
Marathe MV, Ravi R, Sundaram R. Service constrained network design problems. Nordic Journal on Computing. 1996;3:367–387.
Michalak P. Some comments on simultaneous statistical inference. Wiadomosci Ekologiczne. 1996;42:229–233.
Michalak P. Repeatability of mating behaviour in Montandon. Ethology Ecology & Evolution. 1996;8:19–27.
Nagel K, Rasmussen S, Barrett CL. Network traffic as a self-organized critical phenomena. Stuttgard, Germany: Technical Report LA-UR-96-659; 1996. International twin conference on self-organization and complexity.
Purwantini E, Daniels L. Purification of a novel coenzyme F420-dependent glucose-6-phosphate dehydrogenase from Mycobacterium smegmatis. J Bacteriol. 1996;178:2861–2866. http://www.ncbi.nlm.nih.gov/pubmed/8631674
Rasmussen S, Barrett CL, Baas NA, Olesen MW. A note on simulation and dynamical hierarchies. Stuttgart, Germany; 1996. International twin conference on self-organization and complexity.
Ravi R, Sundaram R, Marathe M, Ravi SS, Rosenkrantz D. Spanning trees short or small. SIAM J. Discrete Mathematics. 1996;9:178–200.
T.B. Shows MA S. Bennett D. Burbee P. Cartwright S. Chandrasekharappa P. Cooper A. Courseaux C. Davies M.-D. Devignes P. Devilee R. Elliott G. Evans J. Fantes H. Garner P. Gaudray D.S. Gerhard M. Gessler M. Higgins H. Hummerich M. James J. Lagercrantz M. Litt P. Little M. Mannens D. Munroe N. Nowak S. O. Report of the fifth international workshop on human chromosome 11 mapping. Cytogenetics and Cell Genetics. 1996;74:1–56.
T.B. Shows MA S. Bennett D. Burbee P. Cartwright S. Chandrasekharappa P. Cooper A. Courseaux C. Davies M.-D. Devignes P. Devilee R. Elliott G. Evans J. Fantes H. Garner P. Gaudray D.S. Gerhard M. Gessler M. Higgins H. Hummerich M. James J. Lagercrantz M. Litt P. Little M. Mannens D. Munroe N. Nowak S. O. Report of the fifth international workshop on human chromosome 11 mapping. Cytogenetics and Cell Genetics. 1996;74:1–56.
Anderson R, Setubal JC. A Parallel Implementation of the Push-Relabel Algorithm for the Maximum Flow Problem. Journal of Parallel and Distributed Computing. 1995;29:17–26.
Arnold DM, Laubenbacher RC. Almost Split-Sequences for Dedekind-Like Rings .2. Communications in Algebra. 1995;23:111–130.
Davis MT, Lee TD, Ronk M, Hefta SA. Microscale immobilized protease reactor columns for peptide mapping by liquid chromatography/mass spectral analyses. Anal Biochem. 1995;224(1):235–244. http://www.ncbi.nlm.nih.gov/pubmed/7710077
Davis MT, Stahl DC, Hefta SA, Lee TD. A microscale electrospray interface for on-line, capillary liquid chromatography/tandem mass spectrometry of complex peptide mixtures. Anal Chem. 1995;67(24):4549–4556. http://www.ncbi.nlm.nih.gov/pubmed/8633788
H.R.Garner. Can informatics keep pace with molecular biology? Laboratory Information Management. 1995;26:69–77.
H.R.Garner. Can informatics keep pace with molecular biology? Laboratory Information Management. 1995;26:69–77.
J. Quackenbush CD J. M. Baliks J. V. Khristich K. Diggle Y. Marchuck J. Tobin S. P. Clark A. Rodkins S. Marcano A. C. Churukian J. S. Hutchinson S. Probst L. Romberg Y. H. Wei N. J. Nowak H. R. Garner M. W. Smith L. Selleri and G. A. Evans. An STS Content Map of Human Chromosome 11: Localization of 910 YAC Clones and 109 Islands. Genomics. 1995;29:512–525.
J. Quackenbush CD J. M. Baliks J. V. Khristich K. Diggle Y. Marchuck J. Tobin S. P. Clark A. Rodkins S. Marcano A. C. Churukian J. S. Hutchinson S. Probst L. Romberg Y. H. Wei N. J. Nowak H. R. Garner M. W. Smith L. Selleri and G. A. Evans. An STS Content Map of Human Chromosome 11: Localization of 910 YAC Clones and 109 Islands. Genomics. 1995;29:512–525.
Krumke S, Noltemeier H, Ravi SS, Marathe M. Complexity and approximability of certain bicriteria location problems. Aachen, Germany: Springer-Verlag: London, UK; 1995:73–87. Proceedings of the 21st International Workshop on Graph-Theoretic Concepts in Computer Science 1017.
Marathe A, Renshaw E. Stock Market Bubbles – Some Historical Perspective. The Journal of Investing. 1995;4:63–73.
Marathe M, Breu H, Hunt III HB, Ravi R, Rosenkrantz D. Simple heuristics for unit disk graphs. Networks. 1995;25:59–68.
Marathe MV, Hunt III HB, Rosenkrantz D, Stearns RE, Radhakrishnan V. Periodically specified satisfiability problems with applications: An alternative to domino problems. Philadelphia, PA; 1995. Proc. 11th Annual IEEE Conference on Computational Complexity.
Marathe MV, Ravi R, Sundaram R, Ravi SS, Rosenkrantz DJ, Hunt III HB. Bicriteria Network Design Problems. Szeged, Hungary: Springer-Verlag: London, UK; 1995:487–498. Proc. of the 22nd International Colloquium on Automata, Languages and Programming 944.
Meidanis J, Setubal JC. Multiple Alignment of Biological Sequences with Gap Flexibility.; 1995. Latin '95: Theoretical Informatics 911.
Meidanis J, Setubal JC. Multiple Alignment of Biological Sequences with Gap Flexibility. Latin '95: Theoretical Informatics. 1995;911:411–426.
Michalak P. Inter-habitat morphometric differentiation in male willow warblers (Phylloscopus trochilus). Ornis Fennica. 1995;72:138–139.
Mukhopadhyay B, Purwantini E, Pihl TD, Reeve JN, Daniels L. Cloning, sequencing, and transcriptional analysis of the coenzyme F420-dependent methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase gene from Methanobacterium thermoautotrophicum strain Marburg and functional expression in Escherichia coli. J Biol Chem. 1995;270:2827–2832. http://www.ncbi.nlm.nih.gov/pubmed/7852356
Peccoud J. Automating Molecular-Biology – A Question of Communication. Bio-Technology. 1995;13:741–745.
Peccoud J, Ycart B. Analytical Results Related to the Statistics of Gene-Products Synthesis. Journal of Cellular Biochemistry. 1995:341.
Peccoud J, Ycart B. Markovian Modeling of Gene-Product Synthesis. Theoretical Population Biology. 1995;48:222–234.
Shawky H, Marathe A. Expected Stock Returns and Volatility in a Two Regime Market. The Journal of Economics and Business. 1995;47:409–422.
Tigano-Milani MS, Honeycutt RJ, Lacey LA, Assis R, McClelland M, Sobral BW. Genetic variability of Paecilomyces fumosoroseus isolates revealed by molecular markers. J Invertebr Pathol. 1995;65:274–282. http://www.ncbi.nlm.nih.gov/pubmed/7745282
Tyler B, Forster H, Coffey MD. Inheritance of avirulence factors and restriction fragment length polymorphism markers in outcrosses of the oomycete Phytophthora sojae. Mol. Plant Microbe Interactions. 1995;8:515–523.
Tyler BM, Holland MJ. RNA polymerases and transcription factors of fungi. In: Brambl R, Marzluf G, Lemke PA, eds. The Mycota: Biochemistry and Molecular Biology. Berlin: Springer-Verlag; 1995:in press. The Mycota: a treatise on the biology of fungi with emphasis on systems for fundamental and applied research Iv.
F. Phytophthora-Sojae Races Have Arisen by Clonal Evolution and by Rare Outcrosses. Molecular Plant-Microbe Interactions. 1994;7:780–791.
Garner HR. Automating the Genome Center. IEEE Engineering in Medicine and Biology. 1994;12:281–283.
Garner HR. Coordinating Robotics and Informatics in the Industrial and Research Laboratory.; 1994. 3rd International Conference on Automation, Robotics and Artificial Intelligence applied to Analytic.
Garner HR. Instrumentation and Informatics Tools for Rapid Genomic or Diagnostic Analysis via PCR. San Francisco; 1994. PCR and Alternative Amplification Technologies for Diagnostics.
Garner HR. Coordinating Robotics and Informatics in the Industrial and Research Laboratory.; 1994. 3rd International Conference on Automation, Robotics and Artificial Intelligence applied to Analytic.
Garner HR. Instrumentation and Informatics Tools for Rapid Genomic or Diagnostic Analysis via PCR. San Francisco; 1994. PCR and Alternative Amplification Technologies for Diagnostics.
Garner HR. Automating the Genome Center. IEEE Engineering in Medicine and Biology. 1994;12:281–283.
Garner H. Advances in Automated DNA Sequencing. Implications HGP: C, ed.; 1994.
Hunt III HB, Marathe M, Radhakrishnan V, Ravi S, Rosenkrantz D, Stearns R. Approximation schemes using L-reductions. Madras, India; 1994:342–353. Proceedings of 14th Foundations of Software Technology and Theoretical Computer Science (FST & TCS), 880.
Hunt III HB, Marathe M, Radhakrishnan V, Ravi S, Rosenkrantz D, Stearns R. A unified approach to approximation schemes for NP – and PSPACE-Hard problems for geometric graphs.; 1994:468–477. Proceedings of 2nd Annual European Symposium on Algorithms, (ESA) 855.
Hunt HB III, Marathe M, Stearns R. Generalized CNF satisfiability problems and non-efficient approximability. Amsterdam, Netherlands; 1994:356–366. Proceedings of the 9th IEEE Annual Conference on Structure in Complexity Theory.
Laubenbacher RC, Pengelley DJ. Gauss, Eisenstein, and the 3rd Proof of the Quadratic Reciprocity Theorem – Ein-Kleines-Schauspiel. Mathematical Intelligencer. 1994;16:67–72.
Marathe A. Macroeconomic Determinants of Emerging Stock Markets' Performance: Theory and Evidence. Rutgers University; 1994. First Annual Conference on Multinational Financial Issues.
Marathe A, Shawky H. Predictability of Stock Returns and Real Output. The Quarterly Review of Economics and Finance. 1994;34:317–331.
Marathe M, Hunt III HB, Ravi SS. The complexity of approximating PSPACE-Complete problems for hierarchical specifications. Nordic Journal on Computing. 1994;1:275–316.
Marathe MV, Hunt III HB, Stearns R, Radhakrishnan V. Approximation Schemes for PSPACE-complete problems for succinct specifications. Montreal, Canada: ACM Press: New York, NY; 1994:468–477. Proc. 26th Annual ACM Symposium on the Theory of Computing (STOC).
Mead W, Fischer H, Jones R, Bisset K, Lee L. Application of adaptive and neural network computational techniques to traffic volume and classification monitoring. Transportation Research Record. 1994;1466:116–123.
Meidanis J, Setubal JC. An Introduction to Computational Biology.; 1994. IX Escola de Computacao.
Peccoud J, Viville S. Stochastic Aspects of Cellular-Differentiation Dynamics. M S-Medecine Sciences. 1994;10:877–883.
Pengelley RL and D. Eisenstein. College Mathematics Journal. 1994;25:29–34.
Pessolani MC, Smith DR, Rivoire B, et al. Purification, characterization, gene sequence, and significance of a bacterioferritin from Mycobacterium leprae. J Exp Med. 1994;180(1):319–327. http://www.ncbi.nlm.nih.gov/pubmed/8006590
Purwantini E, Mukhopadhyay B, Daniels L. Characterization of F-390 Synthetase-Activity in Cell-Extracts of Methanobacterium-Thermoautotrophicum Marburg. Canadian Journal of Microbiology. 1994;40:306–309.
R. Laubenbacher DP and MS. Recovering motivation in mathematics: teaching with original sources. UME Trends. 1994;6.
Ravi R, Sundaram R, Marathe M, Rosenkrantz D, Ravi SS. Spanning trees short or small. Arlington, Virginia; 1994:546–555. Proceedings of the 5th ACM-SIAM Symposium on Discrete Algorithms (SODA).
Rivoire B, Pessolani MC, Bozic CM, et al. Chemical definition, cloning, and expression of the major protein of the leprosy bacillus. Infect Immun. 1994;62(6):2417–2425. http://www.ncbi.nlm.nih.gov/pubmed/7910593
Siddoway RL and M. Great Problems of mathematics: a workshop for high school students. College Mathematics Journal. 1994:112–114.
Anderson RJ, Setubal JC. Goldberg's algorithm for maximum flow in perspective: a computational study. In: Johnson DS, McGeoch CC, eds. First DIMACS Implementation Challenge -- Network Flows and Matching. American Mathematical Society; 1993:1–18. DIMACS Series in Mathematics and Theoretical Computer Science 12.
Enghild JJ, Salvesen G, Thogersen IB, Valnickova Z, Pizzo SV, Hefta SA. Presence of the protein-glycosaminoglycan-protein covalent cross-link in the inter-alpha-inhibitor-related proteinase inhibitor heavy chain 2/bikunin. J Biol Chem. 1993;268(12):8711–8716. http://www.ncbi.nlm.nih.gov/pubmed/7682553
Eubank S, Theiler J. Don't Bleach Chaotic Data. Chaos. 1993;3:771–782.
Garner HR. Information Processing and the Demands of Molecular Biology. Laboratory 1993 CCC on AAC for the C, ed. Oak Ridge, TN; 1993.
Garner HR. Advanced Instrumentation, Automation and Informatics for the Human Genome Project, General Biology and Medicine. Oak Ridge, TN; 1993. Fusion Power Associates – Technology Transfer Symposium,.
Garner HR. Lab Automation in the Human Genome Project. Washington, DC; 1993. Scientific Computing & Automation Conference.
Garner HR. Advanced Instrumentation, Automation and Informatics for the Human Genome Project, General Biology and Medicine. Oak Ridge, TN; 1993. Fusion Power Associates – Technology Transfer Symposium,.
Garner HR. Lab Automation in the Human Genome Project. Washington, DC; 1993. Scientific Computing & Automation Conference.
H.R. Garner DML and BA. High-throughput PCR. BioTechniques. 1993;14:112–115.
H.R. Garner DML and BA. High-throughput PCR. BioTechniques. 1993;14:112–115.
Kamoun S, Young M, Glascock C, Tyler BM. Extracellular protein elicitors of Phytophthora: host-specificity and induction of resistance to bacterial and fungal phytopathogens. Mol. Plant-Microbe Interact.. 1993;6:15–25.
Kasuya J, Paz IB, Maddux BA, Goldfine ID, Hefta SA, Fujita-Yamaguchi Y. Characterization of human placental insulin-like growth factor-I/insulin hybrid receptors by protein microsequencing and purification. Biochemistry. 1993;32(49):13531–13536. http://www.ncbi.nlm.nih.gov/pubmed/8257688
Mahrenholz AM, Yeh CH, Shively JE, Hefta SA. Microsequence and mass spectral analysis of nonspecific cross-reacting antigen 160, a CD15-positive neutrophil membrane glycoprotein. Demonstration of identity with biliary glycoprotein. J Biol Chem. 1993;268(18):13015–13018. http://www.ncbi.nlm.nih.gov/pubmed/8099907
Marathe M, Hunt III HB, Ravi SS. The complexity of approximating PSPACE-complete problems for hierarchical specifications. Springer-Verlag: London, UK; 1993:76–87. Proceedings of the 20th International Colloquium on Automata, Languages and Programming (ICALP), Lec 700.
Marathe M, Hunt III HB, Ravi SS. Approximation algorithms for on-line coloring and domatic partition of circular arc graphs.; 1993:26–30. Proceedings of the 5th International Conference on Computing and Information (ICCI).
Marathe MV, Hunt HB III, Ravi SS. Efficient approximation algorithms for domatic partition and on-line coloring of circular arc graphs.; 1993:26–30. Computing and Information, 1993. Proceedings ICCI '93., Fifth International Conference on.
Marathe MV, Radhakrishnan V, Hunt III HB. Hierarchical Specified Unit Disk Graphs. Springer-Verlag: London, UK; 1993:21–32. Proc. of the 19th International Workshop on Graph-Theoretic Concepts in Computer Science Lncs 790.
Mukhopadhyay B, Purwantini E, Daniels L. Effect of Methanogenic Substrates on Coenzyme F-420-Dependent N-5,N-10-Methylene-H-4 Mpt Dehydrogenase, N-5,N-10-Methenyl-H-4 Mpt Cyclohydrolase and F-420-Reducing Hydrogenase Activities in Methanosarcina-Barkeri. Archives of Microbiology. 1993;159:141–146.
Peccoud J. Quantitative PCR – A New Tool for Clinical Investigations. M S-Medecine Sciences. 1993;9:1378–1385.
Pengelley RL and D. Great theorems: the art of mathematics . Newsletter of the International Study Group on the History and Pedagogy of Mathematics. 1993;28:9–10.
Radhakrishnan V, Krumke S, Marathe M, Rosenkrantz D, Ravi S. Compact location problems. Springer-Verlag: London, UK; 1993:238–247. Proceedings of the 13th Foundations of Software Technology and Theoretical Computer Science (FST & T 761.
Ravi R, Marathe M, Ravi SS, Rosenkrantz D, Hunt III HB. Many birds with one stone: Multi-objective approximation algorithms. San Diego, California; 1993:438–447. Proceedings of the 25th annual ACM symposium on Theory of Computing (STOC). http://portal.acm.org/citation.cfm?id=167209
Sauter SL, Rutherfurd SM, Wagener C, Shively JE, Hefta SA. Identification of the specific oligosaccharide sites recognized by type 1 fimbriae from Escherichia coli on nonspecific cross-reacting antigen, a CD66 cluster granulocyte glycoprotein. J Biol Chem. 1993;268(21):15510–15516. http://www.ncbi.nlm.nih.gov/pubmed/8101840
Benguria R, Hoops S, Siedentop H. Bounds on the Excess Charge and the Ionization Energy of the Hellman-Weizs. Annales de l. 1992;45:47–65.
Casdagli M, Eubank S, Farmer JD, et al. Nonlinear modeling of chaotic time series: Theory and applications. In: Kim JH, Stringer J, eds. Applied Chaos. New York: John Wiley & Sons, Inc.; 1992:335–380.
http://isbn.nu/0471544531
Garner BA and HR. Analysis of Protocol Variations on DNA Yield. Gata. 1992;9:134–139.
Garner BA and HR. Analysis of Protocol Variations on DNA Yield. Gata. 1992;9:134–139.
Garner HR. Prototype Automated Instrumentation for the Human Genome Project. Washington, DC; 1992. Scientific Computing & Automation conference.
Garner HR. Prototype Automated Instrumentation for the Human Genome Project. Washington, DC; 1992. Scientific Computing & Automation conference.
Gervois N, Wei B, Dellabona P. Structure of the TCR-AG-MHC Complex. T Lymphocytes. 1992;233:17–23.
Gibson JF, Farmer JD, Casdagli M, Eubank S. An analytic approach to practical state space reconstruction. Physica D.. 1992;57:1–30.
H. R. Garner BA D. Kramarsky G. Evans(Salk) and K. Snyder(Salk). Development and Application of New, High-Throughput Automation for Large Scale Physical Mapping of Human Chromosomes. Cold Spring Harbor; 1992. Cold Spring Harbor Mapping and Sequencing meeting.
H. R. Garner BA D. Kramarsky G. Evans(Salk) and K. Snyder(Salk). Development and Application of New, High-Throughput Automation for Large Scale Physical Mapping of Human Chromosomes. Cold Spring Harbor; 1992. Cold Spring Harbor Mapping and Sequencing meeting.
H.R. Garner BA and DK. High-Throughput DNA Prep System. Gata. 1992;9:127–133.
H.R. Garner BA and DK. High-Throughput DNA Prep System. Gata. 1992;9:127–133.
Hefta L F. Chen M. Ronk S. Sauter V. Sarin S. Oikawa H. Nakazato S.A. Hefta J. Shively. Expression of carcinoembryonic antigen and its predicted immunoglobulin-like domains in HeLa cells for epitope analysis. Cancer Research. 1992;52:5647–5655.
Honeycutt RJ, Sobral BW, McClelland M, Atherly AG. Analysis of large DNA from soybean (Glycine max L. Merr.) by pulsed-field gel electrophoresis. Plant J. 1992;2:133–135. http://www.ncbi.nlm.nih.gov/pubmed/1303793
Laubenbacher RC, Magurn BA. Sk2 and K3 of Dihedral Groups. Canadian Journal of Mathematics-Journal Canadien De Mathematiques. 1992;44:591–623.
Laubenbacher RC, Pengelley DJ. Great Problems of Mathematics – a Course Based on Original Sources. American Mathematical Monthly. 1992;99:313–317.
Marathe A. Do Stock Returns Depend on Monetary or Real Factors. Syracuse University; 1992. New York State Economics Association Conference.
Marathe M, Breu H, Hunt III HB, Ravi S, Rosenkrantz D. Simple heuristics for unit disk graphs.; 1992. Proceedings of the 4th Canadian Conference on Computational Geometry (CCCG) 224-249.
Marathe M, Ravi R, Rangan CP. Generalized vertex covering in interval graphs. Discrete Applied Mathematics. 1992;39:87–93.
Purwantini E, Mukhopadhyay B, Spencer RW, Daniels L. Effect of temperature on the spectral properties of coenzyme F420 and related compounds. Anal Biochem. 1992;205:342–350. http://www.ncbi.nlm.nih.gov/pubmed/1443583
Tayi GK, Marathe M. Integrated approach to multi stage production system and lot sizing. San Francisco, California; 1992. Presented at the 34th TIMS ORSA Joint Conference.
Vandeflierdt E, Bauer R, Laubenbacher C, Didic M, Langhammer HR, Pabst HW. Early Diagnosis of Morphological-Functional Changes of the Airways by a Simple Method of Inhalation Scintigraphy. Nuklearmedizin. 1992;31:7–15.
Arnold DM, Laubenbacher RC. Almost Split-Sequences for Dedekind-Like Rings. Journal of the London Mathematical Society-Second Series. 1991;43:225–235.
Barrett C, Bobrowicz F, Brickner RG, et al. Supercomputing at Los-Alamos-National-Laboratory. International Journal of Supercomputer Applications and High Performance Computing. 1991;5:3–9.
Casdagli M, Eubank S, Farmer JD, Gibson J. State space reconstruction in the presence of noise. Physic D. 1991;51:52–98.
Enghild JJ, Salvesen G, Hefta SA, Thogersen IB, Rutherfurd S, Pizzo SV. Chondroitin 4-sulfate covalently cross-links the chains of the human blood protein pre-alpha-inhibitor. J Biol Chem. 1991;266(2):747–751. http://www.ncbi.nlm.nih.gov/pubmed/1898736
H.R. Garner ACL and T. Ohkawa. Measurement of the Microwave Absorption for Small Samples in a Coaxial Line. IEEE Transactions in Microwave Theory and Techniques. 1991;39.
H.R. Garner ACL and T. Ohkawa. Measurement of the Microwave Absorption for Small Samples in a Coaxial Line. IEEE Transactions in Microwave Theory and Techniques. 1991;39.
H.R. Garner MAA. The Macintosh Autorad Seqence System.; 1991. AIP Conference on Computational Physics.
H.R. Garner MAA. The Macintosh Autorad Seqence System.; 1991. AIP Conference on Computational Physics.
H.R. Garner TO O. Tuason R.L. Lee. Properties of the Hydration Layer Studied with Microwave Absorption Spectroscopy.; 1991. Thirty Fifth Annual Meeting of the Biophysical Society.
H.R. Garner TO O. Tuason R.L. Lee. Properties of the Hydration Layer Studied with Microwave Absorption Spectroscopy.; 1991. Thirty Fifth Annual Meeting of the Biophysical Society.
J.C. Anderson MHS H.R. Garner and L. Peranich. Ultra-Microcell for Spectrometric Measurement of Microvolume Samples. Beckman Technical Information Bulletin. 1991.
J.C. Anderson MHS H.R. Garner and L. Peranich. Ultra-Microcell for Spectrometric Measurement of Microvolume Samples. Beckman Technical Information Bulletin. 1991.
Laubenbacher RC, Webb DL. The Structure of the Integral Group-Ring of a Finite-Group with Cyclic Sylow Subgroups. Communications in Algebra. 1991;19:2281–2290.
Leusch HG, Drzeniek Z, Hefta SA, Markos-Pusztai Z, Wagener C. The putative role of members of the CEA-gene family (CEA, NCA an BGP) as ligands for the bacterial colonization of different human epithelial tissues. Zentralbl Bakteriol. 1991;275(1):118–122. http://www.ncbi.nlm.nih.gov/pubmed/1718301
Lewis HRG and AC. Variable Frequency Cavity for Measurements of Complex Permittivity and Permeability. IEEE Transactions in Microwave Theory and Techniques. 1991.
Lewis HRG and AC. Variable Frequency Cavity for Measurements of Complex Permittivity and Permeability. IEEE Transactions in Microwave Theory and Techniques. 1991.
Mahrenholz AM, Hefta SA, Mansour TE. Phosphofructokinase from Fasciola hepatica: sequence of the cAMP-dependent protein kinase phosphorylation site. Arch Biochem Biophys. 1991;288(2):463–467. http://www.ncbi.nlm.nih.gov/pubmed/1832841
Mao Y, Tyler BM. Genome Organization of Phytophthora megasperma f.sp. glycinea. Exp. Mycol.. 1991;15:283–291.
Mooser G, Hefta SA, Paxton RJ, Shively JE, Lee TD. Isolation and sequence of an active-site peptide containing a catalytic aspartic acid from two Streptococcus sobrinus alpha-glucosyltransferases. J Biol Chem. 1991;266(14):8916–8922. http://www.ncbi.nlm.nih.gov/pubmed/1827439
Mukhopadhyay B, Purwantini E, Demacario EC, Daniels L. Characterization of a Methanosarcina Strain Isolated from Goat Feces, and That Grows on H2-Co2 Only after Adaptation. Current Microbiology. 1991;23:165–173.
Sauter SL, Rutherfurd SM, Wagener C, Shively JE, Hefta SA. Binding of nonspecific cross-reacting antigen, a granulocyte membrane glycoprotein, to Escherichia coli expressing type 1 fimbriae. Infect Immun. 1991;59(7):2485–2493. http://www.ncbi.nlm.nih.gov/pubmed/1675630
Sobral BW, Honeycutt RJ, Atherly AG. The genomes of the family Rhizobiaceae: size, stability, and rarely cutting restriction endonucleases. J Bacteriol. 1991;173:704–709. http://www.ncbi.nlm.nih.gov/pubmed/1846148
Barrett C, Donnell M. Real time expert advisory systems: Considerations and imperatives. Information and Decision Technologies. 1990;16:15–25.
Eubank S, Casdagli M, Farmer JD, Gibson J. State space forecasting and noise reduction.; 1990:641–642 vol.2.
Eubank S, Farmer JD. Introduction to Chaos and Randomness. In: Jen E, Wesley A, eds. chapter 4 in 1989 Lectures in Complex Systems, Santa Fe Institute Studies in the Sciences of Complexity, Lectures. Vol. 12. Also Appeared in Nonlinear Science ed. L. Lam, Springer-Verlag (1996); 1990:75–190.
H.R. Garner ACL and M.K. Thomas. Micropipette Adaptor for Spectrophotometers. Rev. Sci. Instrum. 1990;61.
H.R. Garner ACL and M.K. Thomas. Micropipette Adaptor for Spectrophotometers. Rev. Sci. Instrum. 1990;61.
H.R. Garner AMH L.S. Peranich A.W. Leonard T. Ohkawa J. D'Aoust. An Inexpensive X-ray Source Based on an Electron Cyclotron. Rev. Sci. Instrum. 1990;61.
H.R. Garner AMH L.S. Peranich A.W. Leonard T. Ohkawa J. D'Aoust. An Inexpensive X-ray Source Based on an Electron Cyclotron. Rev. Sci. Instrum. 1990;61.
H.R. Garner JLK R.B. Stephens A.C. Lewis A.J. Lieber W.J. DeHope. Measurement of Permittivity at Elevated Temperatures Using Cavity Perturbation and CO2 Laser Irradiation. Rev. Sci. Instrum. 1990;61.
H.R. Garner JLK R.B. Stephens A.C. Lewis A.J. Lieber W.J. DeHope. Measurement of Permittivity at Elevated Temperatures Using Cavity Perturbation and CO2 Laser Irradiation. Rev. Sci. Instrum. 1990;61.
H.R. Garner OT R.L. Lee. Oligonucleotide Properties Measured with Fluorescence. San Diego; 1990. The Fifth San Diego Conference, Nucleic Acids: New Frontiers, American Association of Clinical Chemi.
H.R. Garner OT R.L. Lee. Oligonucleotide Properties Measured with Fluorescence. San Diego; 1990. The Fifth San Diego Conference, Nucleic Acids: New Frontiers, American Association of Clinical Chemi.
H.R. Garner TO O. Tuason and R.L Lee. Microwave Absorption in the Hydration Layers of Polymers. Phys. Rev. A.. 1990;42.
H.R. Garner TO O. Tuason and R.L Lee. Microwave Absorption in the Hydration Layers of Polymers. Phys. Rev. A.. 1990;42.
Hefta SA, Paxton RJ, Shively JE. Sequence and glycosylation site identity of two distinct glycoforms of nonspecific cross-reacting antigen as demonstrated by sequence analysis and fast atom bombardment mass spectrometry. J Biol Chem. 1990;265(15):8618–8626. http://www.ncbi.nlm.nih.gov/pubmed/2341397
Laubenbacher RC, Webb DL. On Sgn of Orders. Journal of Algebra. 1990;133:125–131.
Leusch HG, Hefta SA, Drzeniek Z, Hummel K, Markos-Pusztai Z, Wagener C. Escherichia coli of human origin binds to carcinoembryonic antigen (CEA) and non-specific crossreacting antigen (NCA). FEBS Lett. 1990;261(2):405–409. http://www.ncbi.nlm.nih.gov/pubmed/2178978
Sobral BW, Sadowsky MJ, Atherly AG. Genome analysis of Bradyrhizobium japonicum serocluster 123 field isolates by using field inversion gel electrophoresis. Appl Environ Microbiol. 1990;56:1949–1953. http://www.ncbi.nlm.nih.gov/pubmed/2383015
Wong C, Hefta SA, Paxton RJ, Shively JE, Mooser G. Size and subdomain architecture of the glucan-binding domain of sucrose:3-alpha-D-glucosyltransferase from Streptococcus sobrinus. Infect Immun. 1990;58(7):2165–2170. http://www.ncbi.nlm.nih.gov/pubmed/2142138
Barrett C, Weisgerber SA. Workload Induced Spatio-Temporal Distortions and Safety of Flight: An Investigation of Cognitive Intrusions in Perceptual Processes. Copenhagen: Technical Report, LA-UR-89-2895, Los Alamos National Laboratory; 1989. Situational Awareness in Aerospace Operations, NATO, AGARD.
Eubank S, Miner W, Tajima T, Wiley J. Interactive Computer Simulation and Analysis of Newtonian Dynamics. Ajp. 1989;57:457–463.
Lu G, Mao C, Wei X, Hua Z, Gu X. Crystallization and preliminary X-ray diffraction studies of Bar-headed goose (Anser indicus) methemoglobin. Acta Biophysica Sinica. 1989:259–262.
Pengelley RL and D. Honors mathematics in the liberal arts curriculum. National Honors Report. 1989;10:21–22.
Sobral BW, Atherly AG. A rapid and cost-effective method for preparing genomic DNA from gram-negative bacteria in agarose plugs for pulsed-field gel electrophoresis. Biotechniques. 1989;7:938. http://www.ncbi.nlm.nih.gov/pubmed/2517213
Sobral BW, Atherly AG. Pulse time and agarose concentration affect the electrophoretic mobility of cccDNA during PFGE and FIGE [corrected]. Nucleic Acids Res. 1989;17:7359–7369. http://www.ncbi.nlm.nih.gov/pubmed/2798097
A.M. Howald DRB T.E. Evans H.R. Garner A.W. Hyatt A.W. Leonard L.S. Peranich A. Mohri Y Hamada K. Kawahata and the JIPP TII-U Group. Increased Collection Efficiency of the HIDEX Pump Limiter on JIPP TII-U. Bulletin of the American Physical Society. 1988;33.
A.M. Howald DRB T.E. Evans H.R. Garner A.W. Hyatt A.W. Leonard L.S. Peranich A. Mohri Y Hamada K. Kawahata and the JIPP TII-U Group. Increased Collection Efficiency of the HIDEX Pump Limiter on JIPP TII-U. Bulletin of the American Physical Society. 1988;33.
A.W. Leonard DRB T.E. Evans H.R. Garner A.M. Howald L.S. Peranich A. Mohri S. Okamura and the JIPP TII-U Group. Heat Loading and Plasma Interaction on the Hidex Pumped Limiter in the JIPP TII-U Tokamak. Bulletin of the American Physical Society. 1988;33.
A.W. Leonard DRB T.E. Evans H.R. Garner A.M. Howald L.S. Peranich A. Mohri S. Okamura and the JIPP TII-U Group. Heat Loading and Plasma Interaction on the Hidex Pumped Limiter in the JIPP TII-U Tokamak. Bulletin of the American Physical Society. 1988;33.
A.W. LeonardA. Mohri OK T.E. Evans N. Ohyabu Y.Hamada K. Kawahata J.S. deGrassie L.S. Peranich K. Ida H.R. Garner. Resonant helical divertor experiments in ohmic and auxiliary heated JIPP T-IIU plasmas. Julich, Federal Republic of Germany: General Atomics; 1988. 8th International Conference on Plasma Surface Interactions.
A.W. LeonardA. Mohri OK T.E. Evans N. Ohyabu Y.Hamada K. Kawahata J.S. deGrassie L.S. Peranich K. Ida H.R. Garner. Resonant helical divertor experiments in ohmic and auxiliary heated JIPP T-IIU plasmas. Julich, Federal Republic of Germany: General Atomics; 1988. 8th International Conference on Plasma Surface Interactions.
Barrett CL, Stokes JM. AEW-RTAS in a KOALAS Environment: A concept Demonstration of an Intelligent CICO Workstation. Analytics Technical Report 2100.11. 1988.
H. Fujita RK A.M. Howald S. Okamura T. Sato K. Adati H.R. Garner and K. Nishimura. Potential Formation in the Plasma Confinement Region of a Radio-Frequency Plugged Linear Device. J. Phys. Soc. Japan. 1988;57.
H. Fujita RK A.M. Howald S. Okamura T. Sato K. Adati H.R. Garner and K. Nishimura. Potential Formation in the Plasma Confinement Region of a Radio-Frequency Plugged Linear Device. J. Phys. Soc. Japan. 1988;57.
H.R. Garner TO L.S. Peranich A.M. Howald J.R. D'Aoust A. Leonard. An Inexpensive X-ray Source based on an Electron Cyclotron. General Atomics; 1988. General Atomics Internal Reports.
Hefta SA, Hefta LJ, Lee TD, Paxton RJ, Shively JE. Carcinoembryonic antigen is anchored to membranes by covalent attachment to a glycosylphosphatidylinositol moiety: identification of the ethanolamine linkage site. Proc Natl Acad Sci U S A. 1988;85(13):4648–4652. http://www.ncbi.nlm.nih.gov/pubmed/3387431
Hinoda Y, Neumaier M, Hefta SA, et al. Molecular cloning of a cDNA coding biliary glycoprotein I: primary structure of a glycoprotein immunologically crossreactive with carcinoembryonic antigen. Proc Natl Acad Sci U S A. 1988;85(18):6959–6963. http://www.ncbi.nlm.nih.gov/pubmed/2457922
K. Adati RK H. Fujita T. Oda K. Kadota K. Takiyama M. Hamamoto T. Ohgo T. Watanabe T. Aoki J. Fujita S. Hidekuma T. Kawamoto H. Masumoto K. Nishimura S. Okamura T. Sato H.R. Garner A.M. Howald. Potential Formation in an RF-Plugged Axisymmetric Mirror-Cusp Device. Nice; 1988. 12th International Conference on Plasma Physics and Controlled Nuclear Fusion Research Iaea-Cn-50.
K. Adati RK H. Fujita T. Oda K. Kadota K. Takiyama M. Hamamoto T. Ohgo T. Watanabe T. Aoki J. Fujita S. Hidekuma T. Kawamoto H. Masumoto K. Nishimura S. Okamura T. Sato H.R. Garner A.M. Howald. Potential Formation in an RF-Plugged Axisymmetric Mirror-Cusp Device. Nice; 1988. 12th International Conference on Plasma Physics and Controlled Nuclear Fusion Research Iaea-Cn-50.
L.S. Peranich DRB T.E. Evans H.R. Garner A.M. Howald A.W. Leonard A.. Mohri S. Okamura and the JIPP TII-U group. Pump Limiter Experiments on the JIPP TII-U Tokamak. Bulletin of the American Physical Society. 1988;33.
L.S. Peranich DRB T.E. Evans H.R. Garner A.M. Howald A.W. Leonard A.. Mohri S. Okamura and the JIPP TII-U group. Pump Limiter Experiments on the JIPP TII-U Tokamak. Bulletin of the American Physical Society. 1988;33.
Laubenbacher RC. Generalized Mayer-Vietoris Sequences in Algebraic K-Theory. Journal of Pure and Applied Algebra. 1988;51:175–192.
R. Kumazawa KA T. Aoki H. Fujita S. Hidekuma T. Kawamoto H. Nishimura S. Okamura T. Sato T. Hatori H.R. Garner A.M. Howald and B. J. Leikind. Scaling Studies on RF Plugging Potential in the Cusp-Anchored Mirror Device, RFC-XX-M. Phys. Soc. Japan. 1988;57.
R. Kumazawa KA T. Aoki H. Fujita S. Hidekuma T. Kawamoto H. Nishimura S. Okamura T. Sato T. Hatori H.R. Garner A.M. Howald and B. J. Leikind. Scaling Studies on RF Plugging Potential in the Cusp-Anchored Mirror Device, RFC-XX-M. Phys. Soc. Japan. 1988;57.
Staff P. Mirror Confinement Systems Final Technical Report.; 1988.
T.E. Evans JS deG H.R. Garner A.W. Leonard N. Ohyabu L S. Peranich A. Mohri Y. Hamada K. Ida O. Kaneko K. Kawahata S. Kitagawa T. Kuroda K. Madai S. Morita Y. Ogawa S. Okamura K.N. Sato M. Sakamoto H. Yamada K. Yamazaki T. Watari the ICRF NBI and JIPP T-IIU Operations groups and F. Karger. Resonant Helical Divertor Experiments in Ohmic and Auxiliary Heated JIPP T-IIU Plasmas," Journal of Nuclear Materals, (8th International Conference on Plasma Surface Interactions.; 1988. 8th International Conference on Plasma Surface Interactions; Journal of Nuclear Materals.
T.E. Evans JS deG H.R. Garner A.W. Leonard N. Ohyabu L S. Peranich A. Mohri Y. Hamada K. Ida O. Kaneko K. Kawahata S. Kitagawa T. Kuroda K. Madai S. Morita Y. Ogawa S. Okamura K.N. Sato M. Sakamoto H. Yamada K. Yamazaki T. Watari the ICRF NBI and JIPP T-IIU Operations groups and F. Karger. Resonant Helical Divertor Experiments in Ohmic and Auxiliary Heated JIPP T-IIU Plasmas," Journal of Nuclear Materals, (8th International Conference on Plasma Surface Interactions.; 1988. 8th International Conference on Plasma Surface Interactions; Journal of Nuclear Materals.
T.E. Evans KA A. Ando D.R. Baker J. deGrassie H.R. Garner Y. Hamada S. Hidekuma A.M. Howald K. Ida O. Kaneko K. Kawahata S. Kitagawa T. Kumazawa T. Kuroda A.W. Leonard K. Masai K. Matsuura A. Mohri S. Morita Y. Ogawa S. Okamura T. Ozaki L.S. Peranich M. Sakamoto K.N. Sato S. Tanahashi K. Toi Y. Tomita T. Watari H. Yamada K. Yamazaki the ICRF NBI and NTX Operations groups. Resonant Helical Divertor Experiment Using Large m/n = 3/1, 4/1 Islands in the JIPP T-IIU Tokamak. Nice; 1988:347–352. 12th International Conference on Plasma Physics and Controlled Nuclear Fusion Research Iaea-Cn-50.
T.E. Evans KA A. Ando D.R. Baker J. deGrassie H.R. Garner Y. Hamada S. Hidekuma A.M. Howald K. Ida O. Kaneko K. Kawahata S. Kitagawa T. Kumazawa T. Kuroda A.W. Leonard K. Masai K. Matsuura A. Mohri S. Morita Y. Ogawa S. Okamura T. Ozaki L.S. Peranich M. Sakamoto K.N. Sato S. Tanahashi K. Toi Y. Tomita T. Watari H. Yamada K. Yamazaki the ICRF NBI and NTX Operations groups. Resonant Helical Divertor Experiment Using Large m/n = 3/1, 4/1 Islands in the JIPP T-IIU Tokamak. Nice; 1988:347–352. 12th International Conference on Plasma Physics and Controlled Nuclear Fusion Research Iaea-Cn-50.
Eubank S, Chiu C. Migdal-Kadanoff Determination of the Gell-Mann-Low Function for Mixed Action SU(2) Lattice Gauge Theories. Nuc. Phys.. 1987;B285:363–389.
Howald DB J. deGrassie T. Evans H.R. Garner N. Ohyabu L. Peranich A. Mohri Y. Hamada Y. Ogawa S. Okamura K. Yamazaki K. Kawahata and the NTX Group. Measurements near the q=3 Surface in the NTX (JIPP TII-U) Tokamak during Resonant m=3 Helical Magnetic Field Operation. Bulletin of the American Physical Society. 1987;32.
Howald DB J. deGrassie T. Evans H.R. Garner N. Ohyabu L. Peranich A. Mohri Y. Hamada Y. Ogawa S. Okamura K. Yamazaki K. Kawahata and the NTX Group. Measurements near the q=3 Surface in the NTX (JIPP TII-U) Tokamak during Resonant m=3 Helical Magnetic Field Operation. Bulletin of the American Physical Society. 1987;32.
T.E. Evans DRB W. Bard J.S. DeGrassie H.R. Garner A.M. Howald N. Ohyabu L. Peranich Y. Hamada S. Hidekuma A. Mohri Y. Ogawa S. Okamura K. Yamazaki and the NTX Group. Resonant Helical Divertor Experiments on the NTX (JIPP TII-U) Tokamak. Bulletin of the American Physical Society. 1987;32.
T.E. Evans DRB W. Bard J.S. DeGrassie H.R. Garner A.M. Howald N. Ohyabu L. Peranich Y. Hamada S. Hidekuma A. Mohri Y. Ogawa S. Okamura K. Yamazaki and the NTX Group. Resonant Helical Divertor Experiments on the NTX (JIPP TII-U) Tokamak. Bulletin of the American Physical Society. 1987;32.
A.M. Howald HRG B.J. Leikind H. Fujita. Heavy Ion Beam Probe for Space Potential Measurements on RFC-XX-M. Bulletin of the American Physical Society. 1986;31.
A.M. Howald HRG B.J. Leikind H. Fujita. Heavy Ion Beam Probe for Space Potential Measurements on RFC-XX-M. Bulletin of the American Physical Society. 1986;31.
B.J. Leikind HRG A.M. Howald P. Parks and the RFC-XX-M Group. Recent Results from n-mode Operation of RFC-XX-M. Bulletin of the American Physical Society. 1986;31.
B.J. Leikind HRG A.M. Howald P. Parks and the RFC-XX-M Group. Recent Results from n-mode Operation of RFC-XX-M. Bulletin of the American Physical Society. 1986;31.
Group TS and the RFC-XX-M. International Cooperation on the RFC-XX-M Experiment. Plasma Research. 1986;3(2).
Group TS and the RFC-XX-M. International Cooperation on the RFC-XX-M Experiment. Plasma Research. 1986;3.
H.R. Garner et.al. Negative Potential Mode in RFC-XX-M. Saskatoon, Canada; 1986. Conference Record of the 1986 IEEE International Conference on Plasma Science.
H.R. Garner et.al. Negative Potential Mode in RFC-XX-M. Saskatoon, Canada; 1986. Conference Record of the 1986 IEEE International Conference on Plasma Science.
H.R. Garner HDP T. Sato K. Adati T. Aoki H. Fujita K Hattori S. Hidekuma T. Kawamoto R. Kumazawa S. Okamura Y. Okubo. Azimuthal Non-Uniformities Induced by ICH and ECH in the RFC-XX Mirror Plasma. Nuclear Fusion. 1986;26.
H.R. Garner HDP T. Sato K. Adati T. Aoki H. Fujita K Hattori S. Hidekuma T. Kawamoto R. Kumazawa S. Okamura Y. Okubo. Azimuthal Non-Uniformities Induced by ICH and ECH in the RFC-XX Mirror Plasma. Nuclear Fusion. 1986;26.
S. Okamura KA T. Aoki D.R. Baker H. Fujita H.R. Garner K. Hattori S. Hidekuma T. Kawamoto R. Kumazawa Y. Okubo T. Sato. Plasma Production with Rotating Ion Cyclotron Waves Excited by Nagoya Type-III Antennas in RFC-XX. Nuclear Fusion. 1986;26.
S. Okamura KA T. Aoki D.R. Baker H. Fujita H.R. Garner K. Hattori S. Hidekuma T. Kawamoto R. Kumazawa Y. Okubo T. Sato. Plasma Production with Rotating Ion Cyclotron Waves Excited by Nagoya Type-III Antennas in RFC-XX. Nuclear Fusion. 1986;26.
T. Sato RK S. Okamura K. Adati T. Aoki H. Fujita S. Hidekuma T. Kawamoto H. Masumoto K. Nishimura T. Hatori K. Takayama H.R. Garner H. D. Price A.M. Howald B. J. Leikind H. Ikezi P.B. Parks and P. Andrews. Radiofrequency Plugging and Tandem Mirror Experiments in a Cusp-Anchored Mirror Device. Plasma Physics and Controlled Nuclear Fusion Research. 1986;2:343.
T. Sato RK S. Okamura K. Adati T. Aoki H. Fujita S. Hidekuma T. Kawamoto H. Masumoto K. Nishimura T. Hatori K. Takayama H.R. Garner H. D. Price A.M. Howald B. J. Leikind H. Ikezi P.B. Parks and P. Andrews. Radiofrequency Plugging and Tandem Mirror Experiments in a Cusp-Anchored Mirror Device. Plasma Physics and Controlled Nuclear Fusion Research. 1986;2:343.
Garner HR. Measurement of the Ionization Profile in RFC-XX using hydrogen alpha radiation. General Atomics; 1985. General Atomics Internal Reports.
Garner HR. End of three-year contract report on the RFC-XX-M device research Nagoya, Japan March 1, 1983 thru December 31, 1985. General Atomics; 1985. General Atomics Internal Reports.
Garner HR. Measurement of the Ionization Profile in RFC-XX using hydrogen alpha radiation. General Atomics; 1985. General Atomics Internal Reports.
Garner HR. End of three-year contract report on the RFC-XX-M device research Nagoya, Japan March 1, 1983 thru December 31, 1985. General Atomics; 1985. General Atomics Internal Reports.
Giles NH, Case ME, Baum JA, et al. Gene Organisation and Regulation in the qa (quinic acid) Gene Cluster of Neurospora crassa. In: Timberlake W, ed. Molecular Genetics of Filamentous Fungi. New York: Allan Liss; 1985:95–116.
H. Price HG D. Baker P. Parks H. Ikezi T. Sato K. Adati S. Okamura R. Kumazawa T. Aoki K. Nishimura S. Hidekuma T. Kawamoto H. Fujita Y. Okubo. Operating Modes of RFC-XX-M which involve Ambipolar Potential Plugging. Bulletin of the American Physical Society. 1985;30.
H. Price HG D. Baker P. Parks H. Ikezi T. Sato K. Adati S. Okamura R. Kumazawa T. Aoki K. Nishimura S. Hidekuma T. Kawamoto H. Fujita Y. Okubo. Operating Modes of RFC-XX-M which involve Ambipolar Potential Plugging. Bulletin of the American Physical Society. 1985;30.
H.D. Price HRG H. Ikezi. Convective radial transport in RFC-XX-M. General Atomics; 1985. General Atomics Internal Reports.
H.D. Price HRG H. Ikezi. A Laser Ablation technique to measure plasma cross-field transport velocity. General Atomics; 1985. General Atomics Internal Reports.
H.D. Price HRG H. Ikezi. Convective radial transport in RFC-XX-M. General Atomics; 1985. General Atomics Internal Reports.
H.D. Price HRG H. Ikezi. A Laser Ablation technique to measure plasma cross-field transport velocity. General Atomics; 1985. General Atomics Internal Reports.
H.R. Garner HDP. Azimuthal Nonuniformities induced by ICH and ECH in the RFC-XX mirror plasma. General Atomics; 1985. General Atomics Internal Reports.
H.R. Garner HDP. Azimuthal Nonuniformities induced by ICH and ECH in the RFC-XX mirror plasma. General Atomics; 1985. General Atomics Internal Reports.
H.R. Garner HP S. Okamura T. Sato T. Aoki R. Kumazawa T. Adati T. Kawamoto K. Nishimura. Hot Electron Plasmas in RFC-XX-M," Bulletin of the American Physical Society. Bulletin of the American Physical Society. 1985;30.
H.R. Garner HP S. Okamura T. Sato T. Aoki R. Kumazawa T. Adati T. Kawamoto K. Nishimura. Hot Electron Plasmas in RFC-XX-M," Bulletin of the American Physical Society. Bulletin of the American Physical Society. 1985;30.
H.R. Garner TA. Pulse discharge cleaning for open-ended systems. General Atomics; 1985. General Atomics Internal Reports.
H.R. Garner TA. Pulse discharge cleaning for open-ended systems. General Atomics; 1985. General Atomics Internal Reports.
K. Muraoka KU Y. Itsumi M. Hamamoto M. Maeda M. Akazaki T. Kawamoto R. Kumazawa S. Okamura K. Adati T. Aoki H. Fujita K. Hattori S. Hidekuma Y. Okubo T. Sato H.R. Garner D. R. Baker H. D. Price. 'Measurements of Atomic Hydrogen-Density Profiles in RFC-XX-M Machine Using Laser Fluorescense Spectroscopy at the H-alpha Transition. Jap. Journal of Appl. Phys. 1985;24.
K. Muraoka KU Y. Itsumi M. Hamamoto M. Maeda M. Akazaki T. Kawamoto R. Kumazawa S. Okamura K. Adati T. Aoki H. Fujita K. Hattori S. Hidekuma Y. Okubo T. Sato H.R. Garner D. R. Baker H. D. Price. 'Measurements of Atomic Hydrogen-Density Profiles in RFC-XX-M Machine Using Laser Fluorescense Spectroscopy at the H-alpha Transition. Jap. Journal of Appl. Phys. 1985;24.
M.A. Prelas DB T.J. Dolan J. Freeman J. Kunze S.McGhee W. Ard F. Bieniosek H. Garner. Progress on the Missouri Mirror. Bulletin of the American Physical Society. 1985;30.
M.A. Prelas DB T.J. Dolan J. Freeman J. Kunze S.McGhee W. Ard F. Bieniosek H. Garner. Progress on the Missouri Mirror. Bulletin of the American Physical Society. 1985;30.
R. Kumazawa KA T. Aoki H. Fujita K. Hattori S. Hidekuma T. Kawamoto K. Nishimura S. Okamura Y. Okubo T. Sato T. Hatori H.R. Garner H.D. Price. Sloshing Ion Distribution Produced by ICRF in an Axisymmetric Mirror-Cusp Device, RFC-XX-M. Budapest; 1985. Proc. 12th European COnference on Controlled Fusion and Plasma Physics, I.
R. Kumazawa KA T. Aoki H. Fujita K. Hattori S. Hidekuma T. Kawamoto K. Nishimura S. Okamura Y. Okubo T. Sato T. Hatori H.R. Garner H.D. Price. Sloshing Ion Distribution Produced by ICRF in an Axisymmetric Mirror-Cusp Device, RFC-XX-M. Budapest; 1985. Proc. 12th European COnference on Controlled Fusion and Plasma Physics, I.
Aoki HRG and T. Pulse Discharge Cleaning for Open Ended Systems. Fusion Technol. (USA),. 1984;9.
Aoki HRG and T. Pulse Discharge Cleaning for Open Ended Systems. Fusion Technol. (USA),. 1984;9.
D.R. Baker HRG P.B. Parks A.M. Sleeper S. Okamura K. Adati T. Aoki H. Fujita K. Hattori T. Kawamoto R. Kumazawa Y. Okubo and T. Sato. Stability studies of a hollow plasma in the double cusp experiment. Phys. Fluids. 1984;27.
D.R. Baker HRG P.B. Parks A.M. Sleeper S. Okamura K. Adati T. Aoki H. Fujita K. Hattori T. Kawamoto R. Kumazawa Y. Okubo and T. Sato. Stability studies of a hollow plasma in the double cusp experiment. Phys. Fluids. 1984;27.
Garner HR. Plasma Confinement in RFC-XX-M, An Axisymmetric Cusp End Celled Mirror Machine. Bulletin of the American Physical Society. 1984;29.
Garner HR. Plasma Confinement in RFC-XX-M, An Axisymmetric Cusp End Celled Mirror Machine. Bulletin of the American Physical Society. 1984;29.
H.D. Price HI H.R. Garner. Radial transport studies in RFC-XX-M. General Atomics; 1984. General Atomics Internal Reports.
H.D. Price HI H.R. Garner. Negative potential mode operation in RFC-XX-M. General Atomics; 1984. General Atomics Internal Reports.
H.D. Price HI H.R. Garner. Radial transport studies in RFC-XX-M. General Atomics; 1984. General Atomics Internal Reports.
H.D. Price HI H.R. Garner. Negative potential mode operation in RFC-XX-M. General Atomics; 1984. General Atomics Internal Reports.
H.D. Price HRG H. Ikezi. Evidence of rapid radial transport in the RFC-XX-M Plasma. General Atomics; 1984. General Atomics Internal Reports.
H.D. Price HRG H. Ikezi. A Laser Ablation technique to measure cross field transport velocity. General Atomics; 1984. General Atomics Internal Reports.
H.D. Price HRG H. Ikezi. Evidence of rapid radial transport in the RFC-XX-M Plasma. General Atomics; 1984. General Atomics Internal Reports.
H.D. Price HRG H. Ikezi. A Laser Ablation technique to measure cross field transport velocity. General Atomics; 1984. General Atomics Internal Reports.
H.D. Price HRG R.L. Freeman P. Parks K. Adati T. Aoki H. Fujita K. Hattori S. Hidekuma T. Kawamoto R. Kumazawa S. Okamura Y. Okubo T. Sato. Radial Transport in RFC-XX-M. Bulletin of the American Physical Society. 1984;29.
H.D. Price HRG R.L. Freeman P. Parks K. Adati T. Aoki H. Fujita K. Hattori S. Hidekuma T. Kawamoto R. Kumazawa S. Okamura Y. Okubo T. Sato. Radial Transport in RFC-XX-M. Bulletin of the American Physical Society. 1984;29.
H.R. Garner DP D. Baker R. Freeman P. Parks A. Sleeper T. Sato S. Okamura K. Adati R. Kumazawa T. Aoki H. Fujita. Performance of Cusp Anchor/Plugs on the RFC-XX Tandem Mirror. Ieee; 1984. Conference Record of 1984 IEEE International COnference on Plasma Science IEEE Pub. Nol. 84CH1958-8.
H.R. Garner DP D. Baker R. Freeman P. Parks A. Sleeper T. Sato S. Okamura K. Adati R. Kumazawa T. Aoki H. Fujita. Performance of Cusp Anchor/Plugs on the RFC-XX Tandem Mirror. Ieee; 1984. Conference Record of 1984 IEEE International COnference on Plasma Science IEEE Pub. Nol. 84CH1958-8.
H.R. Garner HDP. Mirror cusp experiment on RFC-XX technical progress report for 1 Jan 1984 thru 1 Apr 1984. General Atomics; 1984. General Atomics Internal Reports.
H.R. Garner HDP. Trip report: Nagoya Institute of Plasma Physics Japan 6 Jan thru 11 Apr 1984. General Atomics; 1984. General Atomics Internal Reports.
H.R. Garner HDP. Azimuthal Nonuniformities induced by ECH and ICH in the RFC-XX mirror plasma.; 1984.
H.R. Garner HDP. Trip report: Nagoya Institute of Plasma Physics Japan 6 Jan thru 11 Apr 1984. General Atomics; 1984. General Atomics Internal Reports.
H.R. Garner HDP. Mirror cusp experiment on RFC-XX technical progress report for 1 Jan 1984 thru 1 Apr 1984. General Atomics; 1984. General Atomics Internal Reports.
H.R. Garner HDP H. Ikezi. Trip report: Nagoya Institute of Plasma Physics Japan 27 July to 11 Oct 1984 Nagoya Japan. General Atomics; 1984. General Atomics Internal Reports.
H.R. Garner HDP H. Ikezi. Trip report: Nagoya Institute of Plasma Physics Japan 27 July to 11 Oct 1984 Nagoya Japan. General Atomics; 1984. General Atomics Internal Reports.
H.R. Garner HDP K. Matsuda R.L. Freeman P.B. Parks K. Adati T. Aoki H. Fujita K. Hattori S. Hidekuma T. Kawamoto R. Kumazawa S. Okamura Y. Okubo T. Sato. ECH Sustain Mode in RFC-XX-M. Bulletin of the American Physical Society. 1984;29.
H.R. Garner HDP K. Matsuda R.L. Freeman P.B. Parks K. Adati T. Aoki H. Fujita K. Hattori S. Hidekuma T. Kawamoto R. Kumazawa S. Okamura Y. Okubo T. Sato. ECH Sustain Mode in RFC-XX-M. Bulletin of the American Physical Society. 1984;29.
K. Muraoka MM T. Okada C. Honda M. Hamamoto K. Uchino T. Kajiwara Y. Matsuda Y. Itsumi M. Akazaki T. Kawamoto R. Kumazawa S. Okamura H.R. Garner and RFC-XX-M Group. Developments and Applications of Laser-Fluorescence Studies of Particle-Behaviors in Plasma-Surface Interactions. Jour. Nuc. Matls.. 1984;128&129.
K. Muraoka MM T. Okada C. Honda M. Hamamoto K. Uchino T. Kajiwara Y. Matsuda Y. Itsumi M. Akazaki T. Kawamoto R. Kumazawa S. Okamura H.R. Garner and RFC-XX-M Group. Developments and Applications of Laser-Fluorescence Studies of Particle-Behaviors in Plasma-Surface Interactions. Jour. Nuc. Matls.. 1984;128&129.
P.B. Parks HRG H.D. Price. RFC-XX-M axial density Profile. General Atomics; 1984. General Atomics Internal Reports.
P.B. Parks HRG H.D. Price. RFC-XX-M axial density Profile. General Atomics; 1984. General Atomics Internal Reports.
P.B. Parks HRG H.D. Price H. Ikezi. Mirror cusp experiment on RFC-XX technical progress report for July 1 1984 thru October 31 1984. General Atomics; 1984. General Atomics Internal Reports.
P.B. Parks HRG H.D. Price H. Ikezi. Mirror cusp experiment on RFC-XX technical progress report for July 1 1984 thru October 31 1984. General Atomics; 1984. General Atomics Internal Reports.
P.B. Parks RLF K. Matsuda D. Price H. Garner K. Adati T. Aoki H. Fujita K. Hattori S. Hidekuma T. Kawamoto R. Kumazawa S. Okamura Y. Okubo T. Sato. Radial Transport in RFC-XX-M Induced By Nonazimuthal Heating. Bulletin of the American Physical Society. 1984;29.
P.B. Parks RLF K. Matsuda D. Price H. Garner K. Adati T. Aoki H. Fujita K. Hattori S. Hidekuma T. Kawamoto R. Kumazawa S. Okamura Y. Okubo T. Sato. Radial Transport in RFC-XX-M Induced By Nonazimuthal Heating. Bulletin of the American Physical Society. 1984;29.
S. Okamura RK K. Adati T. Aoki H. Fujita K.Hattori S. Hidekuma T. Kawamoto Y. Okubo T. Sato T. Hattori K. Muraoka K. Uchino M. Maeda M. Hamamoto K. Sunako K. Takayama D. R. Baker H.R. Garner H.D. Price P.B. Parks A.M. Sleeper R. Itatani Y. Yasaka. Plasma Heating, Confinement and Stabilization Experiments in an Axisymmetric Mirror-Cusp Device. Plasma Physics and Controlled Nuclear Fusion Research. 1984;2:337.
S. Okamura RK K. Adati T. Aoki H. Fujita K.Hattori S. Hidekuma T. Kawamoto Y. Okubo T. Sato T. Hattori K. Muraoka K. Uchino M. Maeda M. Hamamoto K. Sunako K. Takayama D. R. Baker H.R. Garner H.D. Price P.B. Parks A.M. Sleeper R. Itatani Y. Yasaka. Plasma Heating, Confinement and Stabilization Experiments in an Axisymmetric Mirror-Cusp Device. Plasma Physics and Controlled Nuclear Fusion Research. 1984;2:337.
T. Aoki HDP R. Kumazawa H.R. Garner K. Adati Y. Okubo T. Kawamoto K. Hattori T. Sato S. Okamura H. Fujita. Azimuthal Nonuniformities induced by ECRF and ICRF in the RFC-XX mirror Plasma. General Atomics; 1984. General Atomics Internal Reports.
T. Aoki HDP R. Kumazawa H.R. Garner K. Adati Y. Okubo T. Kawamoto K. Hattori T. Sato S. Okamura H. Fujita. Azimuthal Nonuniformities induced by ECRF and ICRF in the RFC-XX mirror Plasma. General Atomics; 1984. General Atomics Internal Reports.
A.M. Sleeper DRB H.R. Garner P.B. Parks T. Sato K. Adati R. Kumazawa O. Okamura T. Aoki. Transport in RFC-XX. Bulletin of the American Physical Society. 1983;28.
A.M. Sleeper DRB H.R. Garner P.B. Parks T. Sato K. Adati R. Kumazawa O. Okamura T. Aoki. Transport in RFC-XX. Bulletin of the American Physical Society. 1983;28.
A.M. Sleeper TA K. Hattori D.R. Baker S. Okamura H. Fujita T. Kawamoto H.R. Garner K. Adati S. Hidekuma P.B. Parks. Stability studies of a hollow plasma in the RFC-XX double cusp. General Atomics; 1983. General Atomics Internal Reports:.
A.M. Sleeper TA K. Hattori D.R. Baker S. Okamura H. Fujita T. Kawamoto H.R. Garner K. Adati S. Hidekuma P.B. Parks. Stability studies of a hollow plasma in the RFC-XX double cusp. General Atomics; 1983. General Atomics Internal Reports:.
D.R. Baker HDP H.R. Garner. Plasma confinement parameters on RFC-XX. General Atomics; 1983. General Atomics Internal Reports.
D.R. Baker HDP H.R. Garner. Plasma confinement parameters on RFC-XX. General Atomics; 1983. General Atomics Internal Reports.
D.R. Baker HRG. Trip report: Nagoya Institute of plasma Physics Japan 1 Mar thru 12 July 1983. General Atomics; 1983. General Atomics Internal Reports.
D.R. Baker HRG. Trip report: Nagoya Institute of plasma Physics Japan 1 Mar thru 12 July 1983. General Atomics; 1983. General Atomics Internal Reports.
D.R. Baker HRG P.B. Parks A.M. Sleeper T. Sato K. Adati R. Kumazawa S. Okamura T. Aoki. Stability Studies of a Hollow Cusp Plasma in RFC-XX. Bulletin of the American Physical Society. 1983;28.
D.R. Baker HRG P.B. Parks A.M. Sleeper T. Sato K. Adati R. Kumazawa S. Okamura T. Aoki. Stability Studies of a Hollow Cusp Plasma in RFC-XX. Bulletin of the American Physical Society. 1983;28.
Garner HR. Trip report: University of Wisconsin -Madison, Phaedrus Tandem Mirror. General Atomics; 1983. General Atomics Internal Reports.
Garner HR. Trip report: University of Wisconsin -Madison, Phaedrus Tandem Mirror. General Atomics; 1983. General Atomics Internal Reports.
H.R. Garner DRB P.B. Parks H.D. Price A.M. Sleeper T. Sato. K. Adati R. Kumazawa S. Okamura T. Aoki H. Fujita. Initial Tandem Experiments in RFC-XX. Bulletin of the American Physical Society. 1983;28.
H.R. Garner DRB P.B. Parks H.D. Price A.M. Sleeper T. Sato. K. Adati R. Kumazawa S. Okamura T. Aoki H. Fujita. Initial Tandem Experiments in RFC-XX. Bulletin of the American Physical Society. 1983;28.
J.D. Callen RND C.M. Fortgang H.R. Garner A.G. Kellman D.W. Kerst M.W. Phillips S.C. Prager J.C. Sprott E.J. Strait J.C. Twichell M.C. Zarnstorff. High-Beta Neoclassical Current and Stability Experiments. Plasma Physics and Controlled Nuclear Fusion Research. 1983;2:143.
J.D. Callen RND C.M. Fortgang H.R. Garner A.G. Kellman D.W. Kerst M.W. Phillips S.C. Prager J.C. Sprott E.J. Strait J.C. Twichell M.C. Zarnstorff. High-Beta Neoclassical Current and Stability Experiments. Plasma Physics and Controlled Nuclear Fusion Research. 1983;2:143.
Kemp DJ, Cowman AF, Gerondakis SD, et al. Processing of Immunoglobulin Heavy Chain Gene Transcripts. In: Nagley P, Linnane AW, Peacock WJ, Pateman JA, eds. Manipulation and Expression of Genes in Eukaryotes. Sydney: Academic Press; 1983:33–40.
Sleeper DB S. Garner P. Parks. Stability of a Magnetic Cusp. San Diego, CA; 1983. Conference Record of the 1983 IEEE International Conference on Plasma Science.
Sleeper DB S. Garner P. Parks. Stability of a Magnetic Cusp. San Diego, CA; 1983. Conference Record of the 1983 IEEE International Conference on Plasma Science.
T. Sato SO K. Adati T. Aoki D. R. Baker H. Fujita H.R. Garner K. Hattori S. Hidekuma T. Kawamoto R. Kumazawa Y. Okubo and K. Uchino. Buildup and Sustainment of 1013 cm-3 Plasma by ICRF in RFC-XX. Rancho Sante Fe: Oak Ridge National Laboratory; 1983. Proc. US-Japan Workshop on Advanced Bumpy Torus Concepts, Rancho Sante Fe Conf-830758.
T. Sato SO K. Adati T. Aoki D. R. Baker H. Fujita H.R. Garner K. Hattori S. Hidekuma T. Kawamoto R. Kumazawa Y. Okubo and K. Uchino. Buildup and Sustainment of 1013 cm-3 Plasma by ICRF in RFC-XX. Rancho Sante Fe: Oak Ridge National Laboratory; 1983. Proc. US-Japan Workshop on Advanced Bumpy Torus Concepts, Rancho Sante Fe Conf-830758.
A.M. Sleeper HRG P.B. Parks. Stabilizing a Cusp with an Electron Ring. Bulletin of the American Physical Society. 1982;27.
A.M. Sleeper HRG P.B. Parks. Stabilizing a Cusp with an Electron Ring. Bulletin of the American Physical Society. 1982;27.
H.R. Garner AMS D.R. Baker. Stabilized Cusp End Cells on RFC-XX in Nagoya Japan. Bulletin of the American Physical Society. 1982;27.
H.R. Garner AMS D.R. Baker. Stabilized Cusp End Cells on RFC-XX in Nagoya Japan. Bulletin of the American Physical Society. 1982;27.
H.R. Garner DRB. Trip report: Nagoya Institute of plasma Physics Japan 27 Aug thru 21 Oct 1982. General Atomics; 1982. General Atomics Internal Reports.
H.R. Garner DRB. Trip report: Nagoya Institute of plasma Physics Japan 27 Aug thru 21 Oct 1982. General Atomics; 1982. General Atomics Internal Reports.
P.B. Parks HRG A.M. Sleeper. Conditions for stabilizing a cusp with a hot electron ring. General Atomics; 1982. General Atomics Internal Reports.
P.B. Parks HRG A.M. Sleeper. Conditions for stabilizing a cusp with a hot electron ring. General Atomics; 1982. General Atomics Internal Reports.
A.B. Ehrhardt HRG G.A. Navratil and R.S. Post. Cross-field diffusion and fluctuation spectra in the levitated octupole in the presence of a toroidal field. Phys. Fluids. 1981;24.
A.B. Ehrhardt HRG G.A. Navratil and R.S. Post. Cross-field diffusion and fluctuation spectra in the levitated octupole in the presence of a toroidal field. Phys. Fluids. 1981;24.
A.Y. Wong RWS J. Ferron G. Dimonte M. Fukao M.Q. Tran K. Yatsu J.R. Conrad H. Garner J.A. Halle A. Kellman D. Kerst M.W. Phillips R.S. Post S.C. Prager E.A. Rose J.C. Sprott E.J. Strait R.J. Torti M. Zarnstorff. High-Beta Confinement Experiments in Multipole/Surmac. Plasma Physics and Controlled Nuclear Fusion Research. 1981;2:709.
A.Y. Wong RWS J. Ferron G. Dimonte M. Fukao M.Q. Tran K. Yatsu J.R. Conrad H. Garner J.A. Halle A. Kellman D. Kerst M.W. Phillips R.S. Post S.C. Prager E.A. Rose J.C. Sprott E.J. Strait R.J. Torti M. Zarnstorff. High-Beta Confinement Experiments in Multipole/Surmac. Plasma Physics and Controlled Nuclear Fusion Research. 1981;2:709.
Cory S, Kemp DJ, Bernard O, et al. Number and Organisation of Immunoglobulin Variable Region Genes in the Mouse. In: Janeway C, Sercarz EE, Wigzell H, eds. Immunoglobulin Idiotypes. New York: Academic Press; 1981:49–58.
H.R. Garner RSP. A Study of Fluctuation Induced Transport with Microwave Scattering in the Wisconsin Levitated Octupole. Bulletin of the American Physical Society. 1981;26.
H.R. Garner RSP. A Study of Fluctuation Induced Transport with Microwave Scattering in the Wisconsin Levitated Octupole. Bulletin of the American Physical Society. 1981;26.
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